Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G034290.1 | Barley | cytosol | 83.58 | 93.46 |
| TraesCS7A01G151300.1 | Wheat | nucleus | 93.58 | 93.06 |
| HORVU7Hr1G031130.2 | Barley | nucleus | 92.26 | 92.44 |
| TraesCS7D01G153200.1 | Wheat | nucleus | 91.89 | 91.37 |
| Os06t0186600-02 | Rice | cytosol | 56.79 | 77.18 |
| KXG19496 | Sorghum | nucleus | 73.58 | 72.76 |
| Zm00001d037085_P005 | Maize | nucleus | 73.21 | 71.99 |
| Zm00001d045084_P002 | Maize | cytosol | 73.02 | 71.93 |
| GSMUA_Achr5P04640_001 | Banana | nucleus | 52.83 | 54.16 |
| VIT_11s0037g00810.t01 | Wine grape | cytosol | 49.62 | 47.56 |
| KRH63129 | Soybean | nucleus | 46.6 | 46.34 |
| PGSC0003DMT400036859 | Potato | cytosol | 44.91 | 46.03 |
| KRH03001 | Soybean | cytosol | 42.64 | 45.84 |
| AT2G24100.1 | Thale cress | nucleus | 40.19 | 45.71 |
| Solyc03g117680.2.1 | Tomato | cytosol | 46.04 | 45.69 |
| Solyc07g005990.2.1 | Tomato | cytosol | 45.66 | 45.4 |
| PGSC0003DMT400029158 | Potato | cytosol | 45.66 | 45.4 |
| PGSC0003DMT400074432 | Potato | nucleus | 43.4 | 45.36 |
| KRH54987 | Soybean | nucleus | 45.47 | 45.22 |
| CDY34799 | Canola | nucleus | 36.42 | 44.99 |
| Bra039229.1-P | Field mustard | nucleus | 36.42 | 44.99 |
| CDX76839 | Canola | nucleus | 36.23 | 44.86 |
| KRH72344 | Soybean | cytosol | 44.53 | 44.11 |
| VIT_09s0018g01680.t01 | Wine grape | cytosol | 43.96 | 43.88 |
| Solyc06g068540.2.1 | Tomato | cytosol | 42.64 | 42.88 |
| KRH58482 | Soybean | mitochondrion | 32.26 | 42.86 |
| CDY23256 | Canola | nucleus | 42.26 | 41.56 |
| KRH47309 | Soybean | nucleus | 46.6 | 41.24 |
| KRH44588 | Soybean | cytosol | 46.98 | 41.23 |
| CDX68693 | Canola | cytosol | 42.83 | 40.9 |
| CDY36470 | Canola | nucleus | 42.64 | 40.79 |
| TraesCS6B01G387700.1 | Wheat | mitochondrion | 36.98 | 40.66 |
| TraesCS5B01G160900.1 | Wheat | nucleus | 40.38 | 40.45 |
| Bra010274.1-P | Field mustard | cytosol | 42.26 | 40.29 |
| CDY28207 | Canola | cytosol | 12.83 | 40.0 |
| Bra011214.1-P | Field mustard | cytosol | 12.83 | 40.0 |
| Bra024044.1-P | Field mustard | nucleus | 42.83 | 39.96 |
| CDY28214 | Canola | cytosol | 43.02 | 39.86 |
| Bra011221.1-P | Field mustard | nucleus | 42.64 | 39.72 |
| CDY39241 | Canola | cytosol | 42.45 | 39.68 |
| CDX72268 | Canola | nucleus | 41.89 | 39.22 |
| AT4G30780.1 | Thale cress | nucleus | 43.21 | 38.88 |
| KRH28821 | Soybean | peroxisome | 28.87 | 35.83 |
| TraesCS5B01G505000.1 | Wheat | cytosol | 24.15 | 26.23 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G055300.1 | EnsemblPlantsGene:TraesCS7B01G055300 | PANTHER:PTHR33494 | PANTHER:PTHR33494:SF1 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr7B:-:58727424..58733811
Molecular Weight (calculated)
58060.3 Da
IEP (calculated)
5.091
GRAVY (calculated)
-0.589
Length
530 amino acids
Sequence
(BLAST)
(BLAST)
001: MVQLPAMGKR QHPEAAEPPM APAAAVKMEA DELRDYEHGP LGKRARPAQP SPPPPPHQDM YHNVLDEPSP LGLRLKKSPS LLDLIQMRLS QANSDAGQSS
101: TDNAEPSKKK DLKSGTSSAG ERLKASNFPA SVLKIGKWEY TSKYEGDLVA KCYFAKHKLV WEVLEGGLKS KIEIQWSDIT ALKVTLPEIG DGSLDVMLAR
201: PPLFFKETDP QPRKHTLWQA TSDFTCGQAS INRHHFLKCP TTSLGKNFEK LVQCDQRLHQ LSQQTDVILD SSVFEPRCSI FEDPVELKCH DFANLKDERE
301: DLPGFSGSVS PCAGSSMSTK NDTNDFFGKQ PEFVAQPMNP GASAVNAQPV SRNVNGVAQE FNIPNWWSQL KVPGLRPSMS VDDLVSHLGN CISEQITSGN
401: PSMANNEVPT KESLEEIAQY LLGDVQGPQA PASDERLMAR VDSLCCLLQK DTAPTSQPKP EPNNSDSIGG VDSEGSDDEF SSASTRKTAD ANQPPPAMSR
501: KDSFGDLLMN LPRIASIPQF LFKIPEDSEN
101: TDNAEPSKKK DLKSGTSSAG ERLKASNFPA SVLKIGKWEY TSKYEGDLVA KCYFAKHKLV WEVLEGGLKS KIEIQWSDIT ALKVTLPEIG DGSLDVMLAR
201: PPLFFKETDP QPRKHTLWQA TSDFTCGQAS INRHHFLKCP TTSLGKNFEK LVQCDQRLHQ LSQQTDVILD SSVFEPRCSI FEDPVELKCH DFANLKDERE
301: DLPGFSGSVS PCAGSSMSTK NDTNDFFGKQ PEFVAQPMNP GASAVNAQPV SRNVNGVAQE FNIPNWWSQL KVPGLRPSMS VDDLVSHLGN CISEQITSGN
401: PSMANNEVPT KESLEEIAQY LLGDVQGPQA PASDERLMAR VDSLCCLLQK DTAPTSQPKP EPNNSDSIGG VDSEGSDDEF SSASTRKTAD ANQPPPAMSR
501: KDSFGDLLMN LPRIASIPQF LFKIPEDSEN
001: MVEMMRSENH LRQASKHRNN NFPVKLEIIE DSLEEEHAPL NKRSKLWSNG TSVSKFSLLE EPSPLGLSLK KSPSFQELIE MKLSQSGDDS NSVKKESFGF
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
Arabidopsis Description
ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9ZUI1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.