CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH25265
KRH30399
KRH43068
KRH59198
KRH62407
KRH63018
KRH71579

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24100.1	KRH43068	AT1G73720.1	21798944
AT2G24100.1	KRH59198	AT1G73720.1	21798944
AT2G24100.1	KRH62407	AT1G73720.1	21798944
AT2G24100.1	KRH63018	AT1G73720.1	21798944
AT2G24100.1	KRH71579	AT1G73720.1	21798944
AT4G30780.1	KRH25265	AT5G22360.1	21798944
AT4G30780.1	KRH30399	AT5G22360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54987	Soybean	nucleus	89.12	89.12
KRH72344	Soybean	cytosol	65.1	64.86
KRH58482	Soybean	mitochondrion	48.03	64.16
KRH03001	Soybean	cytosol	55.91	60.45
VIT_11s0037g00810.t01	Wine grape	cytosol	60.23	58.05
CDX76839	Canola	nucleus	45.03	56.07
Bra039229.1-P	Field mustard	nucleus	45.03	55.94
CDY34799	Canola	nucleus	44.84	55.71
AT2G24100.1	Thale cress	nucleus	48.59	55.58
HORVU0Hr1G040420.1	Barley	cytosol	17.45	54.39
Solyc07g005990.2.1	Tomato	cytosol	53.28	53.28
PGSC0003DMT400029158	Potato	cytosol	53.28	53.28
Os06t0186600-02	Rice	cytosol	38.27	52.31
GSMUA_Achr5P04640_001	Banana	nucleus	49.53	51.06
GSMUA_Achr9P22760_001	Banana	nucleus	50.47	50.56
GSMUA_Achr4P05930_001	Banana	cytosol	50.66	50.47
HORVU3Hr1G034290.1	Barley	cytosol	44.09	49.58
Zm00001d045084_P002	Maize	cytosol	49.16	48.7
Zm00001d037085_P005	Maize	nucleus	48.78	48.24
CDY39241	Canola	cytosol	51.03	47.97
KXG19496	Sorghum	nucleus	48.22	47.95
Bra024044.1-P	Field mustard	nucleus	51.03	47.89
CDY36470	Canola	nucleus	49.72	47.83
CDX68693	Canola	cytosol	49.34	47.39
GSMUA_Achr4P12730_001	Banana	mitochondrion	51.78	47.34
CDY23256	Canola	nucleus	47.84	47.31
Bra010274.1-P	Field mustard	cytosol	49.34	47.3
CDY28214	Canola	cytosol	50.47	47.03
CDX72268	Canola	nucleus	49.91	47.0
Bra011221.1-P	Field mustard	nucleus	50.09	46.92
HORVU7Hr1G031130.2	Barley	nucleus	46.34	46.69
TraesCS7B01G055300.1	Wheat	cytosol	46.34	46.6
AT4G30780.1	Thale cress	nucleus	51.41	46.52
Os02t0793800-00	Rice	cytosol	25.14	46.21
TraesCS7D01G153200.1	Wheat	nucleus	45.4	45.4
TraesCS7A01G151300.1	Wheat	nucleus	45.4	45.4
Bra011214.1-P	Field mustard	cytosol	14.45	45.29
CDY28207	Canola	cytosol	14.45	45.29
KRH44588	Soybean	cytosol	49.53	43.71
KXG31260	Sorghum	cytosol	40.71	43.49
KRH47309	Soybean	nucleus	48.59	43.24
Zm00001d052047_P001	Maize	nucleus	39.21	42.83
GSMUA_Achr4P11470_001	Banana	plasma membrane	43.9	41.49
KRH28821	Soybean	peroxisome	29.64	37.0
TraesCS6A01G354900.1	Wheat	mitochondrion	31.89	35.2
TraesCS6B01G387700.1	Wheat	mitochondrion	31.14	34.44
TraesCS6D01G337100.2	Wheat	mitochondrion	30.39	32.14
KRG90540	Soybean	nucleus	15.95	30.47
KRH33824	Soybean	nucleus	16.14	30.28
KRH30889	Soybean	cytosol	12.95	28.05

Protein Annotations

EMBL:ACUP02002612	EnsemblPlants:KRH63129	EnsemblPlantsGene:GLYMA_04G156300	EntrezGene:100807349	PANTHER:PTHR33494	PANTHER:PTHR33494:SF1
ProteinID:KRH63129	ProteinID:KRH63129.1	SEG:seg	UniParc:UPI000233A080	UniProt:I1JWD7	MapMan:35.2

Description

hypothetical protein

Coordinates

chr4:+:36596394..36599820

Molecular Weight (calculated)

58353.4 Da

IEP (calculated)

5.269

GRAVY (calculated)

-0.596

Length

533 amino acids

Sequence
(BLAST)

001: MVQLMKNSRK PETASSVKLE IVEDSLEEEH APLNKRCKPS ASPLPQPQQW NASDDGSVSS PSHLNILDEP SPLGLRLRKS PSLLDLIQMK LSQGSAQQKE
101: DLSSEAKRES RCASAAAASS GAGAADKLKA SNFPASLLRI GSWEYKSRYE GDLVAKCYFA KHKLVWEVLE GGLKSKIEIQ WSDIMALKAH CPDNGPSTLT
201: VVLARQPLYF RETNPQPRKH TLWQATADFT DGQSSKHRLH FLQCPQGLLA KHFEKLIQCD MRLNFLSQQP EIILDSPHFD TQPSAFEDPD NPKDHDLLQV
301: SGKGSSTSCY QDSGSPQASL SSSFKIEHND PPGMMLDSLP RDAPSPSSVM ECTSIEGSTS SETDSKGPRN GDQIKLPGLR PSMSVSDFIG QIELCLSEQI
401: TSGNPPFSDG GSEYKEILED IAQHLLNDNQ VAATSDEKSL MSRVNSLCCL LQKDPVTVQN SHFTEDNTVE GPDDGKDVKP AVEESKDASG GKQALGMSRK
501: DSFSDLLLHL PRIASLPKFL FNISEEDGNS HAR

Best Arabidopsis Sequence Match ( AT4G30780.1 )
(BLAST)

001: MVEMRKSGGL RPESESAARC RDELPVKLEI AEDDLEEEHG PLNKRSRLWS PGTSSSTMAP AKYNPLDEPS PLGLSLKKSP SLLELIQMKI THCGDPKAAE
101: TLKAGALGSG LKRESKTIAA AASVGPTLAP GSIEKLKASN FPASLLKIGQ WEYKSRYEGD LVAKCYFAKH KLVWEVLEQG LKSKIEIQWS DIMALKANCP
201: EDGPGTLTLV LARQPLFFRE TNPQPRKHTL WQATSDFTDG QASMNRQHFL QCAQGIMNKH FEKLVQCDHR LFHLSRQPEI AIDSPYFDAR QSIFEDPSES
301: KGHPFGNLNL STGPSISGTQ NLASPVGAQS SSEHMYLSHE APSPSSVIDA RANEGIGGSE AVNSRNRTDC GQIEAPGIHQ SMSLSDFLAV LCDTKNTTDL
401: NLADDVDGLH QSMSVSDFVA YLSDSRNITD SDQIKVPGLH QSMSVSDFVG LLSDSAGGSH PEHMEKFEIM KQQLLSDNIQ FEAPDEKSLM PRVNSLFNLL
501: YKDPNVAANS QLNTEMSVGL KSEPKGIVSD NNNNNNNNNR VLDTASSSKP QGMLRKDSFS DLLLHLPRIT SLPKFLSNIS EEDGDAYNR

Arabidopsis Description

ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9SUG8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.