Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G73720.1 | KRH03466 | AT3G47620.1 | 21798944 |
AT1G73720.1 | KRH54542 | AT3G47620.1 | 21798944 |
AT1G73720.1 | KRH56919 | AT3G47620.1 | 21798944 |
AT1G73720.1 | KRH63357 | AT3G47620.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH62407 | Soybean | endoplasmic reticulum, extracellular | 97.37 | 92.5 |
KRH71579 | Soybean | cytosol | 52.63 | 27.65 |
GSMUA_Achr6P25450_001 | Banana | nucleus | 74.56 | 19.81 |
HORVU0Hr1G006640.1 | Barley | cytosol | 71.05 | 17.8 |
KRH43068 | Soybean | nucleus | 79.82 | 17.74 |
KRH59198 | Soybean | endoplasmic reticulum | 79.82 | 17.74 |
GSMUA_Achr9P08610_001 | Banana | cytosol | 74.56 | 16.57 |
VIT_17s0000g08930.t01 | Wine grape | cytosol | 74.56 | 16.54 |
PGSC0003DMT400013292 | Potato | cytosol | 74.56 | 16.54 |
Solyc06g064830.2.1 | Tomato | nucleus | 74.56 | 16.54 |
AT1G73720.1 | Thale cress | cytosol | 71.93 | 16.05 |
TraesCS3B01G226600.1 | Wheat | cytosol | 71.93 | 15.89 |
TraesCS3D01G200300.1 | Wheat | cytosol | 71.93 | 15.86 |
Os01t0322800-01 | Rice | nucleus | 71.93 | 15.86 |
TraesCS3A01G197200.1 | Wheat | nucleus | 71.93 | 15.86 |
Bra015971.1-P | Field mustard | cytosol | 70.18 | 15.62 |
CDY60136 | Canola | cytosol | 70.18 | 15.62 |
CDX73008 | Canola | cytosol | 70.18 | 15.62 |
KXG32415 | Sorghum | cytosol | 70.18 | 15.47 |
Zm00001d040689_P001 | Maize | cytosol | 71.93 | 14.7 |
Protein Annotations
Gene3D:2.130.10.10 | MapMan:35.1 | UniProt:A0A0R0K8H6 | EMBL:ACUP02002565 | EnsemblPlantsGene:GLYMA_04G149500 | GO:GO:0003674 |
GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | EnsemblPlants:KRH63018 |
ProteinID:KRH63018 | ProteinID:KRH63018.1 | PFAM:PF00400 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22848 |
PANTHER:PTHR22848:SF0 | SMART:SM00320 | SUPFAM:SSF50978 | SignalP:SignalP-noTM | UniParc:UPI0006ED8DB2 | InterPro:WD40/YVTN_repeat-like_dom_sf |
InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : | : |
Description
hypothetical protein
Coordinates
chr4:-:31883338..31886029
Molecular Weight (calculated)
13179.9 Da
IEP (calculated)
6.779
GRAVY (calculated)
-0.004
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MHPLLLFAFF SILRTMTWVW DYISGKLKKD LQYQADEVFM MHDDVVLCVD FSTDSEMLSS GSQDGKIKVW RIRTGQCLQR LERVHSQGVT SVSFSRDGSQ
101: LLITSFDSTA RFFI
101: LLITSFDSTA RFFI
001: MALEIEARDV IKIMLQFCKE NSLNQTFQTL QSECQVSLNT VDSVETFISD INSGRWDSVL PQVSQLKLPR NKLEDLYEQI VLEMIELREL DTARAILRQT
101: QVMGVMKQEQ AERYLRMEHL LVRSYFDPHE AYGDSTKERK RAQIAQAVAA EVTVVPPSRL MALIGQALKW QQHQGLLPPG TQFDLFRGTA AMKQDVEDTH
201: PNVLTHTIKF GKKSHAECAR FSPDGQFLAS SSVDGFIEVW DYISGKLKKD LQYQADESFM MHDDPVLCID FSRDSEMLAS GSQDGKIKIW RIRTGVCIRR
301: FDAHSQGVTS LSFSRDGSQL LSTSFDQTAR IHGLKSGKLL KEFRGHTSYV NHAIFTSDGS RIITASSDCT VKVWDSKTTD CLQTFKPPPP LRGTDASVNS
401: IHLFPKNTEH IVVCNKTSSI YIMTLQGQVV KSFSSGNREG GDFVAACVST KGDWIYCIGE DKKLYCFNYQ SGGLEHFMMV HEKDVIGITH HPHRNLLATY
501: SEDCTMKLWK P
101: QVMGVMKQEQ AERYLRMEHL LVRSYFDPHE AYGDSTKERK RAQIAQAVAA EVTVVPPSRL MALIGQALKW QQHQGLLPPG TQFDLFRGTA AMKQDVEDTH
201: PNVLTHTIKF GKKSHAECAR FSPDGQFLAS SSVDGFIEVW DYISGKLKKD LQYQADESFM MHDDPVLCID FSRDSEMLAS GSQDGKIKIW RIRTGVCIRR
301: FDAHSQGVTS LSFSRDGSQL LSTSFDQTAR IHGLKSGKLL KEFRGHTSYV NHAIFTSDGS RIITASSDCT VKVWDSKTTD CLQTFKPPPP LRGTDASVNS
401: IHLFPKNTEH IVVCNKTSSI YIMTLQGQVV KSFSSGNREG GDFVAACVST KGDWIYCIGE DKKLYCFNYQ SGGLEHFMMV HEKDVIGITH HPHRNLLATY
501: SEDCTMKLWK P
Arabidopsis Description
SMU1SMU1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHG8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.