CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH54542
KRH56919
KRH63357

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73720.1	KRH03466	AT3G47620.1	21798944
AT1G73720.1	KRH54542	AT3G47620.1	21798944
AT1G73720.1	KRH56919	AT3G47620.1	21798944
AT1G73720.1	KRH63357	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63018	Soybean	endoplasmic reticulum, extracellular	27.65	52.63
KRH62407	Soybean	endoplasmic reticulum, extracellular	27.19	49.17
GSMUA_Achr6P25450_001	Banana	nucleus	64.52	32.63
KRH43068	Soybean	nucleus	70.51	29.82
KRH59198	Soybean	endoplasmic reticulum	70.51	29.82
GSMUA_Achr9P08610_001	Banana	cytosol	64.98	27.49
VIT_17s0000g08930.t01	Wine grape	cytosol	64.98	27.43
PGSC0003DMT400013292	Potato	cytosol	63.13	26.65
KXG32415	Sorghum	cytosol	63.13	26.5
Solyc06g064830.2.1	Tomato	nucleus	62.21	26.26
TraesCS3D01G200300.1	Wheat	cytosol	61.75	25.92
Os01t0322800-01	Rice	nucleus	61.75	25.92
TraesCS3A01G197200.1	Wheat	nucleus	61.29	25.73
AT1G73720.1	Thale cress	cytosol	60.37	25.64
TraesCS3B01G226600.1	Wheat	cytosol	60.83	25.58
Bra015971.1-P	Field mustard	cytosol	59.91	25.39
CDY60136	Canola	cytosol	59.91	25.39
CDX73008	Canola	cytosol	59.91	25.39
Zm00001d040689_P001	Maize	cytosol	64.98	25.27
HORVU0Hr1G006640.1	Barley	cytosol	47.93	22.86

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EMBL:ACUP02000911	EnsemblPlantsGene:GLYMA_02G156300	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K7K8K8	EnsemblPlants:KRH71579
ProteinID:KRH71579	ProteinID:KRH71579.1	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22848
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000295A512	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:16491872..16494838

Molecular Weight (calculated)

24607.5 Da

IEP (calculated)

7.532

GRAVY (calculated)

-0.133

Length

217 amino acids

Sequence
(BLAST)

001: MMYDDVVLCA DFSRDSKMLA SGSQDGKIKV WRFRTSQCLW RLERAHSQGV TSVSFSRDGS QLLSTSFDRT TRAQLLVQIF NALLLQHILY LSIVKCFNKM
101: LAIMLKEFCG HTLHMNDAIF TNDGSHVIID SSDYTIKVWD VQTTDHIQTF KPPPPLRGGD ASINYVHISP KNTDHIVVVK SFSSGKRESE DFVATCVSPK
201: GEWIYFVGED KYPNLCI

Best Arabidopsis Sequence Match ( AT1G73720.1 )
(BLAST)

001: MALEIEARDV IKIMLQFCKE NSLNQTFQTL QSECQVSLNT VDSVETFISD INSGRWDSVL PQVSQLKLPR NKLEDLYEQI VLEMIELREL DTARAILRQT
101: QVMGVMKQEQ AERYLRMEHL LVRSYFDPHE AYGDSTKERK RAQIAQAVAA EVTVVPPSRL MALIGQALKW QQHQGLLPPG TQFDLFRGTA AMKQDVEDTH
201: PNVLTHTIKF GKKSHAECAR FSPDGQFLAS SSVDGFIEVW DYISGKLKKD LQYQADESFM MHDDPVLCID FSRDSEMLAS GSQDGKIKIW RIRTGVCIRR
301: FDAHSQGVTS LSFSRDGSQL LSTSFDQTAR IHGLKSGKLL KEFRGHTSYV NHAIFTSDGS RIITASSDCT VKVWDSKTTD CLQTFKPPPP LRGTDASVNS
401: IHLFPKNTEH IVVCNKTSSI YIMTLQGQVV KSFSSGNREG GDFVAACVST KGDWIYCIGE DKKLYCFNYQ SGGLEHFMMV HEKDVIGITH HPHRNLLATY
501: SEDCTMKLWK P

Arabidopsis Description

SMU1SMU1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.