Factsheet for TraesCS3A01G197200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G306500.1
TraesCS6B01G334900.1
TraesCS6D01G285600.1
TraesCS7B01G091900.1
TraesCS7D01G187600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73720.1	TraesCS6A01G306500.1	AT3G47620.1	21798944
AT1G73720.1	TraesCS6B01G334900.1	AT3G47620.1	21798944
AT1G73720.1	TraesCS6D01G285600.1	AT3G47620.1	21798944
AT1G73720.1	TraesCS7B01G091900.1	AT3G47620.1	21798944
AT1G73720.1	TraesCS7D01G187600.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G200300.1	Wheat	cytosol	99.61	99.61
TraesCS3B01G226600.1	Wheat	cytosol	99.23	99.42
HORVU0Hr1G006640.1	Barley	cytosol	83.37	94.73
Os01t0322800-01	Rice	nucleus	94.0	94.0
KXG32415	Sorghum	cytosol	93.62	93.62
GSMUA_Achr6P25450_001	Banana	nucleus	73.5	88.58
GSMUA_Achr9P08610_001	Banana	cytosol	87.62	88.3
KRH59198	Soybean	endoplasmic reticulum	87.04	87.72
KRH43068	Soybean	nucleus	86.65	87.33
Zm00001d040689_P001	Maize	cytosol	94.2	87.28
PGSC0003DMT400013292	Potato	cytosol	86.46	86.97
VIT_17s0000g08930.t01	Wine grape	cytosol	86.27	86.77
Solyc06g064830.2.1	Tomato	nucleus	86.27	86.77
Bra015971.1-P	Field mustard	cytosol	81.82	82.62
AT1G73720.1	Thale cress	cytosol	81.24	82.19
KRH62407	Soybean	endoplasmic reticulum, extracellular	17.21	74.17
KRH63018	Soybean	endoplasmic reticulum, extracellular	15.86	71.93
CDY11094	Canola	cytosol	32.88	69.11
CDY41611	Canola	extracellular	11.22	64.44
KRH71579	Soybean	cytosol	25.73	61.29

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:CTLH_C	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943
InterPro:IPR017986	InterPro:LisH	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR22848	PANTHER:PTHR22848:SF0	SMART:SM00320
SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS3A01G197200	EnsemblPlants:TraesCS3A01G197200.1	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200	:

Description

No Description!

Coordinates

chr3A:+:306859562..306882459

Molecular Weight (calculated)

58330.8 Da

IEP (calculated)

7.066

GRAVY (calculated)

-0.386

Length

517 amino acids

Sequence
(BLAST)

001: MASSTSTLEI EARDVVKIML QFCKENSLHQ TFQTLQNECQ VSLNTVDSMD TFIADINAGR WDAVLPQVAQ LKLPRKKLED LYEQIVLEMA ELRELDTARA
101: ILRQTQVMGV MKQEEPERYL RLEHLLVRTY FDPNEAYQES TKEKRRAQIA QAIASEVSVV PPARLMALIT QALKWQQHQG LLPPGTQFDL FRGTAAMKQD
201: EEEAYPTTLS HQIKFGKKTH PECARFSPDG QYLVSCSVDG IIEVWDYVSG KLKKDLQYQA DESFMMHEDA VLCVDFSRDS EMLASGSQDG KIKVWRIRTG
301: QCLRRLERSH AKGVTSVTFS RDGTQILSTS FDTTARIHGL KSGKMLKEFR GHDSYVNYAI FSTDGTRVIT ASSDCTVKVW DAKTADCLQS FKPPPPLRGG
401: DASVNSVHLF PKNSDHIVVC NKTSSIYIMT LQGQVVKSFS SGKREGGDFV AASVSPKGEW IYCVGEDMNM YCFSQQSGKL EHLMKAHDKD VIGITHHPHR
501: NLVATYAEDC MMKIWKP

Best Arabidopsis Sequence Match ( AT1G73720.1 )
(BLAST)

001: MALEIEARDV IKIMLQFCKE NSLNQTFQTL QSECQVSLNT VDSVETFISD INSGRWDSVL PQVSQLKLPR NKLEDLYEQI VLEMIELREL DTARAILRQT
101: QVMGVMKQEQ AERYLRMEHL LVRSYFDPHE AYGDSTKERK RAQIAQAVAA EVTVVPPSRL MALIGQALKW QQHQGLLPPG TQFDLFRGTA AMKQDVEDTH
201: PNVLTHTIKF GKKSHAECAR FSPDGQFLAS SSVDGFIEVW DYISGKLKKD LQYQADESFM MHDDPVLCID FSRDSEMLAS GSQDGKIKIW RIRTGVCIRR
301: FDAHSQGVTS LSFSRDGSQL LSTSFDQTAR IHGLKSGKLL KEFRGHTSYV NHAIFTSDGS RIITASSDCT VKVWDSKTTD CLQTFKPPPP LRGTDASVNS
401: IHLFPKNTEH IVVCNKTSSI YIMTLQGQVV KSFSSGNREG GDFVAACVST KGDWIYCIGE DKKLYCFNYQ SGGLEHFMMV HEKDVIGITH HPHRNLLATY
501: SEDCTMKLWK P

Arabidopsis Description

SMU1SMU1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.