CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41611	Canola	extracellular	23.98	65.56
CDY60136	Canola	cytosol	83.33	40.04
CDX73008	Canola	cytosol	82.93	39.84
VIT_17s0000g08930.t01	Wine grape	cytosol	73.98	35.41
GSMUA_Achr9P08610_001	Banana	cytosol	71.14	34.11
PGSC0003DMT400013292	Potato	cytosol	70.73	33.85
Solyc06g064830.2.1	Tomato	nucleus	70.73	33.85
KXG32415	Sorghum	cytosol	70.73	33.66
Os01t0322800-01	Rice	nucleus	70.73	33.66
TraesCS3B01G226600.1	Wheat	cytosol	69.51	33.14
TraesCS3D01G200300.1	Wheat	cytosol	69.51	33.08
TraesCS3A01G197200.1	Wheat	nucleus	69.11	32.88
Zm00001d040689_P001	Maize	cytosol	70.73	31.18
GSMUA_Achr6P25450_001	Banana	nucleus	47.97	27.51
HORVU0Hr1G006640.1	Barley	cytosol	45.53	24.62

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078FDT4	EnsemblPlants:CDY11094	ProteinID:CDY11094	ProteinID:CDY11094.1
InterPro:CTLH_C	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00049064001
InterPro:IPR001680	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	PFscan:PS50082	PFscan:PS50294
PFscan:PS50897	PANTHER:PTHR22848	PANTHER:PTHR22848:SF0	SMART:SM00320	SMART:SM00668	SUPFAM:SSF50978
UniParc:UPI0004EF05EB	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

BnaC06g23460DBnaC06g23460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDT4]

Coordinates

chrLK032009:-:228086..230970

Molecular Weight (calculated)

27965.8 Da

IEP (calculated)

6.858

GRAVY (calculated)

-0.237

Length

246 amino acids

Sequence
(BLAST)

001: MALKIEARDF CKENSLNQTF QTLHSECQVS LNTVDSVEAF VYDINSGRWD SVLPQDSQLK LPRNKLEDLY EQIVMEMIEL RELDTARAIL RQTQVMGVMK
101: QEQLKEAILI RMSMVVRYCS ALLPNVDGLW GNSTKERKRA QIAQAVAAEV TVVPPSRLMA SVVKSFSSGK REGGDFVAAC VSTKGDWIYC IGEDKKLYCF
201: SYQTGGLEHF MMTWVHEKDV IGVAHHPHRH LIATYSEDCT TKLWKP

Best Arabidopsis Sequence Match ( AT1G73720.1 )
(BLAST)

001: MALEIEARDV IKIMLQFCKE NSLNQTFQTL QSECQVSLNT VDSVETFISD INSGRWDSVL PQVSQLKLPR NKLEDLYEQI VLEMIELREL DTARAILRQT
101: QVMGVMKQEQ AERYLRMEHL LVRSYFDPHE AYGDSTKERK RAQIAQAVAA EVTVVPPSRL MALIGQALKW QQHQGLLPPG TQFDLFRGTA AMKQDVEDTH
201: PNVLTHTIKF GKKSHAECAR FSPDGQFLAS SSVDGFIEVW DYISGKLKKD LQYQADESFM MHDDPVLCID FSRDSEMLAS GSQDGKIKIW RIRTGVCIRR
301: FDAHSQGVTS LSFSRDGSQL LSTSFDQTAR IHGLKSGKLL KEFRGHTSYV NHAIFTSDGS RIITASSDCT VKVWDSKTTD CLQTFKPPPP LRGTDASVNS
401: IHLFPKNTEH IVVCNKTSSI YIMTLQGQVV KSFSSGNREG GDFVAACVST KGDWIYCIGE DKKLYCFNYQ SGGLEHFMMV HEKDVIGITH HPHRNLLATY
501: SEDCTMKLWK P

Arabidopsis Description

SMU1SMU1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.