Factsheet for GSMUA_Achr6P25450_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P00500_001
GSMUA_Achr6P02720_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73720.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT1G73720.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT1G73720.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT1G73720.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P08610_001	Banana	cytosol	96.74	80.9
KRH62407	Soybean	endoplasmic reticulum, extracellular	21.45	76.67
KRH43068	Soybean	nucleus	91.38	76.41
KRH59198	Soybean	endoplasmic reticulum	91.38	76.41
VIT_17s0000g08930.t01	Wine grape	cytosol	91.14	76.07
Solyc06g064830.2.1	Tomato	nucleus	89.98	75.1
PGSC0003DMT400013292	Potato	cytosol	89.74	74.9
KRH63018	Soybean	endoplasmic reticulum, extracellular	19.81	74.56
TraesCS3D01G200300.1	Wheat	cytosol	89.04	73.89
Os01t0322800-01	Rice	nucleus	89.04	73.89
TraesCS3B01G226600.1	Wheat	cytosol	88.81	73.84
TraesCS3A01G197200.1	Wheat	nucleus	88.58	73.5
KXG32415	Sorghum	cytosol	88.34	73.31
AT1G73720.1	Thale cress	cytosol	84.62	71.04
Bra015971.1-P	Field mustard	cytosol	84.38	70.7
Zm00001d040689_P001	Maize	cytosol	88.81	68.28
HORVU0Hr1G006640.1	Barley	cytosol	71.1	67.03
KRH71579	Soybean	cytosol	32.63	64.52
CDY11094	Canola	cytosol	27.51	47.97
GSMUA_Achr6P25470_001	Banana	cytosol	2.8	8.39
CDY41611	Canola	extracellular	0.23	1.11

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr6G25450_001	EnsemblPlants:GSMUA_Achr6P25450_001	EnsemblPlants:GSMUA_Achr6T25450_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M0TA41	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22848	PANTHER:PTHR22848:SF0	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000294A7B7	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

WD40 repeat-containing protein SMU1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G25450_001]

Coordinates

chr6:-:26530796..26543896

Molecular Weight (calculated)

48335.8 Da

IEP (calculated)

7.929

GRAVY (calculated)

-0.388

Length

429 amino acids

Sequence
(BLAST)

001: MIELRELDTA RAILRQTQVM GVMKQEQPER YLRLEHLLVR TYFDPNEAYQ ESTKEKRRAQ IAQALAAEVS VVPPSRLMAL IGQALKWQQH QGLLPQGTQF
101: DLFRGTAAMK QDEDDMYPTT LAHPIKFGKK SHPECARFSP DGQFLVSCSV DGFIEVWDYI SGKLKKDLQY QADDAFMMHD DAVLCVDFSR DSEMLASGSQ
201: DGKIKVWRIR TGQCLRRLER AHSQGVTSLV FSRDSSQLLS TSFDTTARIH GLKSGKLLKE FRGHTSYVND AIFSNDGSRV ITASSDCTVK VWDVKSTDCL
301: HTFKPPPPLR GGDASVNSVH LFPKNPEHII VCNKTSSVYI MTLQGQVVKS FSSGKREGGD FVAACVSPKG EWIYCVGEDM NMYCFSHQSG KLEHLMKVHD
401: KDVIGVTHHP HRNLVVTYGE DCTLKIWKP

Best Arabidopsis Sequence Match ( AT1G73720.1 )
(BLAST)

001: MALEIEARDV IKIMLQFCKE NSLNQTFQTL QSECQVSLNT VDSVETFISD INSGRWDSVL PQVSQLKLPR NKLEDLYEQI VLEMIELREL DTARAILRQT
101: QVMGVMKQEQ AERYLRMEHL LVRSYFDPHE AYGDSTKERK RAQIAQAVAA EVTVVPPSRL MALIGQALKW QQHQGLLPPG TQFDLFRGTA AMKQDVEDTH
201: PNVLTHTIKF GKKSHAECAR FSPDGQFLAS SSVDGFIEVW DYISGKLKKD LQYQADESFM MHDDPVLCID FSRDSEMLAS GSQDGKIKIW RIRTGVCIRR
301: FDAHSQGVTS LSFSRDGSQL LSTSFDQTAR IHGLKSGKLL KEFRGHTSYV NHAIFTSDGS RIITASSDCT VKVWDSKTTD CLQTFKPPPP LRGTDASVNS
401: IHLFPKNTEH IVVCNKTSSI YIMTLQGQVV KSFSSGNREG GDFVAACVST KGDWIYCIGE DKKLYCFNYQ SGGLEHFMMV HEKDVIGITH HPHRNLLATY
501: SEDCTMKLWK P

Arabidopsis Description

SMU1SMU1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.