Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60136 | Canola | cytosol | 92.17 | 91.99 |
| CDX73008 | Canola | cytosol | 91.98 | 91.8 |
| Bra015971.1-P | Field mustard | cytosol | 91.98 | 91.8 |
| KRH43068 | Soybean | nucleus | 87.08 | 86.74 |
| KRH59198 | Soybean | endoplasmic reticulum | 86.89 | 86.55 |
| VIT_17s0000g08930.t01 | Wine grape | cytosol | 86.3 | 85.8 |
| PGSC0003DMT400013292 | Potato | cytosol | 85.13 | 84.63 |
| Solyc06g064830.2.1 | Tomato | nucleus | 85.13 | 84.63 |
| GSMUA_Achr6P25450_001 | Banana | nucleus | 71.04 | 84.62 |
| GSMUA_Achr9P08610_001 | Banana | cytosol | 84.15 | 83.82 |
| KXG32415 | Sorghum | cytosol | 83.56 | 82.59 |
| Os01t0322800-01 | Rice | nucleus | 82.78 | 81.82 |
| TraesCS3B01G226600.1 | Wheat | cytosol | 82.39 | 81.59 |
| TraesCS3D01G200300.1 | Wheat | cytosol | 82.39 | 81.43 |
| TraesCS3A01G197200.1 | Wheat | nucleus | 82.19 | 81.24 |
| HORVU0Hr1G006640.1 | Barley | cytosol | 69.67 | 78.24 |
| Zm00001d040689_P001 | Maize | cytosol | 83.95 | 76.88 |
| KRH62407 | Soybean | endoplasmic reticulum, extracellular | 17.42 | 74.17 |
| KRH63018 | Soybean | endoplasmic reticulum, extracellular | 16.05 | 71.93 |
| KRH71579 | Soybean | cytosol | 25.64 | 60.37 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | EntrezGene:843707 | UniProt:A0A178WHG8 | ProteinID:AAG52064.1 | ProteinID:AEE35501.1 |
| EMBL:AF462796 | ArrayExpress:AT1G73720 | EnsemblPlantsGene:AT1G73720 | RefSeq:AT1G73720 | TAIR:AT1G73720 | RefSeq:AT1G73720-TAIR-G |
| EnsemblPlants:AT1G73720.1 | TAIR:AT1G73720.1 | EMBL:AY102129 | Unigene:At.27865 | InterPro:CTLH_C | ncoils:Coil |
| InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 |
| GO:GO:0009987 | GO:GO:0080008 | InterPro:IPR001680 | InterPro:IPR006594 | InterPro:IPR006595 | InterPro:IPR015943 |
| InterPro:IPR017986 | InterPro:LisH | RefSeq:NP_177513.2 | ProteinID:OAP16985.1 | PFAM:PF00400 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PFscan:PS50896 | PFscan:PS50897 |
| PANTHER:PTHR22848 | PANTHER:PTHR22848:SF0 | UniProt:Q8W117 | SMART:SM00320 | SMART:SM00667 | SMART:SM00668 |
| Symbol:SMU1 | SUPFAM:SSF50978 | UniParc:UPI00000AAFDE | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : | : | : |
Description
SMU1SMU1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHG8]
Coordinates
chr1:+:27724991..27730031
Molecular Weight (calculated)
57726.9 Da
IEP (calculated)
6.998
GRAVY (calculated)
-0.346
Length
511 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEIEARDV IKIMLQFCKE NSLNQTFQTL QSECQVSLNT VDSVETFISD INSGRWDSVL PQVSQLKLPR NKLEDLYEQI VLEMIELREL DTARAILRQT
101: QVMGVMKQEQ AERYLRMEHL LVRSYFDPHE AYGDSTKERK RAQIAQAVAA EVTVVPPSRL MALIGQALKW QQHQGLLPPG TQFDLFRGTA AMKQDVEDTH
201: PNVLTHTIKF GKKSHAECAR FSPDGQFLAS SSVDGFIEVW DYISGKLKKD LQYQADESFM MHDDPVLCID FSRDSEMLAS GSQDGKIKIW RIRTGVCIRR
301: FDAHSQGVTS LSFSRDGSQL LSTSFDQTAR IHGLKSGKLL KEFRGHTSYV NHAIFTSDGS RIITASSDCT VKVWDSKTTD CLQTFKPPPP LRGTDASVNS
401: IHLFPKNTEH IVVCNKTSSI YIMTLQGQVV KSFSSGNREG GDFVAACVST KGDWIYCIGE DKKLYCFNYQ SGGLEHFMMV HEKDVIGITH HPHRNLLATY
501: SEDCTMKLWK P
101: QVMGVMKQEQ AERYLRMEHL LVRSYFDPHE AYGDSTKERK RAQIAQAVAA EVTVVPPSRL MALIGQALKW QQHQGLLPPG TQFDLFRGTA AMKQDVEDTH
201: PNVLTHTIKF GKKSHAECAR FSPDGQFLAS SSVDGFIEVW DYISGKLKKD LQYQADESFM MHDDPVLCID FSRDSEMLAS GSQDGKIKIW RIRTGVCIRR
301: FDAHSQGVTS LSFSRDGSQL LSTSFDQTAR IHGLKSGKLL KEFRGHTSYV NHAIFTSDGS RIITASSDCT VKVWDSKTTD CLQTFKPPPP LRGTDASVNS
401: IHLFPKNTEH IVVCNKTSSI YIMTLQGQVV KSFSSGNREG GDFVAACVST KGDWIYCIGE DKKLYCFNYQ SGGLEHFMMV HEKDVIGITH HPHRNLLATY
501: SEDCTMKLWK P
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.