Factsheet for Solyc06g064830.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g116320.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73720.1	Solyc03g116320.2.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013292	Potato	cytosol	99.61	99.61
VIT_17s0000g08930.t01	Wine grape	cytosol	92.8	92.8
GSMUA_Achr6P25450_001	Banana	nucleus	75.1	89.98
GSMUA_Achr9P08610_001	Banana	cytosol	89.69	89.86
KRH43068	Soybean	nucleus	89.49	89.67
KRH59198	Soybean	endoplasmic reticulum	89.11	89.28
Os01t0322800-01	Rice	nucleus	87.74	87.23
TraesCS3B01G226600.1	Wheat	cytosol	86.77	86.43
TraesCS3D01G200300.1	Wheat	cytosol	86.77	86.27
TraesCS3A01G197200.1	Wheat	nucleus	86.77	86.27
KXG32415	Sorghum	cytosol	86.77	86.27
Bra015971.1-P	Field mustard	cytosol	85.02	85.35
AT1G73720.1	Thale cress	cytosol	84.63	85.13
HORVU0Hr1G006640.1	Barley	cytosol	72.96	82.42
Zm00001d040689_P001	Maize	cytosol	87.55	80.65
KRH62407	Soybean	endoplasmic reticulum, extracellular	17.9	76.67
KRH63018	Soybean	endoplasmic reticulum, extracellular	16.54	74.56
CDY11094	Canola	cytosol	33.85	70.73
CDY41611	Canola	extracellular	11.48	65.56
KRH71579	Soybean	cytosol	26.26	62.21

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:CTLH_C	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986
UniProt:K4C7B3	InterPro:LisH	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR22848	PANTHER:PTHR22848:SF0	SMART:SM00320
SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc06g064830.2	EnsemblPlants:Solyc06g064830.2.1	UniParc:UPI00027670E3
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

Suppressor of mec-8 and unc-52 protein homolog 1 [Source:Projected from Arabidopsis thaliana (AT1G73720) UniProtKB/Swiss-Prot;Acc:Q8W117]

Coordinates

chr6:-:40395463..40407063

Molecular Weight (calculated)

58176.6 Da

IEP (calculated)

6.998

GRAVY (calculated)

-0.365

Length

514 amino acids

Sequence
(BLAST)

001: MSSTLEIEAR DVIKIVLQFC KENSLHQSFQ TLQNECQVSL NTVDSLETFI ADINSGRWDA VLPQVAQLKL PRKILEDLYE QIVLEMIELR EMDTARAILR
101: QTNVMGVMKQ EQPERYLRLE HLLVRTYFDP HEAYNDSTKE KRRAQISQAL SAEVSVVPPS RLMALIGQAL KWQQHQGLLP PGTQFDLFRG TAAMKQDEED
201: MYPTTLGHTI KFGKKSHPEC SRFSPDGQFL VSCSVDGFIE VWDHISGKLK KDLQYQADET FMMHDDAVLC VDFSRDSEML ASGSQDGKIK VWRIRTGQCL
301: RRLERAHSQG VTSLVFSRDG TQILSTSFDS TARIHGLKSG KLLKEFRGHS SYVNDAIFTF DGSRVITASS DGSVKVWDAK TTECLQTFRP PPPLRGGDAS
401: VNSVHLFPKN NEHIIVCNKT SSIYLMTLQG QVVKSFSSGK REGGDFVAAC LSPKGEWIYC VGEDRNLYCF SYQSNKLEHL MKVHEKDVIG ITHHPHINLV
501: ATYGEDCTMK LWKP

Best Arabidopsis Sequence Match ( AT1G73720.1 )
(BLAST)

001: MALEIEARDV IKIMLQFCKE NSLNQTFQTL QSECQVSLNT VDSVETFISD INSGRWDSVL PQVSQLKLPR NKLEDLYEQI VLEMIELREL DTARAILRQT
101: QVMGVMKQEQ AERYLRMEHL LVRSYFDPHE AYGDSTKERK RAQIAQAVAA EVTVVPPSRL MALIGQALKW QQHQGLLPPG TQFDLFRGTA AMKQDVEDTH
201: PNVLTHTIKF GKKSHAECAR FSPDGQFLAS SSVDGFIEVW DYISGKLKKD LQYQADESFM MHDDPVLCID FSRDSEMLAS GSQDGKIKIW RIRTGVCIRR
301: FDAHSQGVTS LSFSRDGSQL LSTSFDQTAR IHGLKSGKLL KEFRGHTSYV NHAIFTSDGS RIITASSDCT VKVWDSKTTD CLQTFKPPPP LRGTDASVNS
401: IHLFPKNTEH IVVCNKTSSI YIMTLQGQVV KSFSSGNREG GDFVAACVST KGDWIYCIGE DKKLYCFNYQ SGGLEHFMMV HEKDVIGITH HPHRNLLATY
501: SEDCTMKLWK P

Arabidopsis Description

SMU1SMU1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.