Factsheet for Zm00001d040689_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018045_P001
Zm00001d037221_P001
Zm00001d044836_P001
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73720.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT1G73720.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT1G73720.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT1G73720.1	Zm00001d052256_P001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32415	Sorghum	cytosol	91.94	99.23
Os01t0322800-01	Rice	nucleus	87.81	94.78
TraesCS3D01G200300.1	Wheat	cytosol	87.46	94.39
TraesCS3A01G197200.1	Wheat	nucleus	87.28	94.2
TraesCS3B01G226600.1	Wheat	cytosol	87.1	94.19
HORVU0Hr1G006640.1	Barley	cytosol	72.76	89.23
KRH59198	Soybean	endoplasmic reticulum	81.72	88.89
GSMUA_Achr6P25450_001	Banana	nucleus	68.28	88.81
KRH43068	Soybean	nucleus	81.54	88.69
GSMUA_Achr9P08610_001	Banana	cytosol	81.0	88.11
PGSC0003DMT400013292	Potato	cytosol	81.0	87.94
VIT_17s0000g08930.t01	Wine grape	cytosol	80.82	87.74
Solyc06g064830.2.1	Tomato	nucleus	80.65	87.55
AT1G73720.1	Thale cress	cytosol	76.88	83.95
Bra015971.1-P	Field mustard	cytosol	76.88	83.79
KRH62407	Soybean	endoplasmic reticulum, extracellular	15.77	73.33
KRH63018	Soybean	endoplasmic reticulum, extracellular	14.7	71.93
CDY11094	Canola	cytosol	31.18	70.73
CDY41611	Canola	extracellular	10.57	65.56
KRH71579	Soybean	cytosol	25.27	64.98

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A1D6MS72	InterPro:CTLH_C	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987
InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH
ProteinID:ONM31810.1	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR22848	PANTHER:PTHR22848:SF0	SMART:SM00320	SMART:SM00667
SMART:SM00668	SUPFAM:SSF50978	UniParc:UPI0008438A48	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d040689	EnsemblPlants:Zm00001d040689_P001	EnsemblPlants:Zm00001d040689_T001	SEG:seg

Description

leunig-related5Suppressor of mec-8 and unc-52 protein homolog 1

Coordinates

chr3:-:58288839..58305955

Molecular Weight (calculated)

63079.9 Da

IEP (calculated)

7.527

GRAVY (calculated)

-0.250

Length

558 amino acids

Sequence
(BLAST)

001: MASSASTLEI EARDVVKIVL QFCKENSLQQ TFQTLQNECQ VSLNTVDSID TFIADINAGR WDAVLPQVAQ LKLPRKKLED LYEQIVLEMA ELRELDTARA
101: ILRQTQVMGV MKQEQPERYL RLEHLLVRTY FDPNEAYQES TKEKRRALIA QAVASEVSVV PPSRLMALIG QALKWQQHQG LLPPGTQFDL FRGTAAMKQD
201: EEETYPTSLS HQIKFGKKTH PECARFSPDG QYLVSCSVDG IIEVWDYLSG KLKKDLQYQA DESFMMHEEP VLCVDFSRDS EMLASGSQDG KIKVWRIRTG
301: QCLRRLERAH SKGVTSVTFS RDGTQILSTS FDTTARFHIT IIYQPNFTVE LSLSCFASFI LLGTKSLWLI FLPPFCRVHG LKSGKMLKEF RGHSSYVNYA
401: IFTTDGSRVI TASSDCTVKV WDTKTTDCLH TFKPPPPLRG GDASVNSVHL FPKNTDHIVV CNKTSSIFIM TLQGQVVKSF SSGKREGGDF VAASVSPKGE
501: WIYCVGEDMN MYCFSYQSGK LEHLMKVHEK DVIGITHHPH RNLVATIAED CMMKIWKP

Best Arabidopsis Sequence Match ( AT1G73720.1 )
(BLAST)

001: MALEIEARDV IKIMLQFCKE NSLNQTFQTL QSECQVSLNT VDSVETFISD INSGRWDSVL PQVSQLKLPR NKLEDLYEQI VLEMIELREL DTARAILRQT
101: QVMGVMKQEQ AERYLRMEHL LVRSYFDPHE AYGDSTKERK RAQIAQAVAA EVTVVPPSRL MALIGQALKW QQHQGLLPPG TQFDLFRGTA AMKQDVEDTH
201: PNVLTHTIKF GKKSHAECAR FSPDGQFLAS SSVDGFIEVW DYISGKLKKD LQYQADESFM MHDDPVLCID FSRDSEMLAS GSQDGKIKIW RIRTGVCIRR
301: FDAHSQGVTS LSFSRDGSQL LSTSFDQTAR IHGLKSGKLL KEFRGHTSYV NHAIFTSDGS RIITASSDCT VKVWDSKTTD CLQTFKPPPP LRGTDASVNS
401: IHLFPKNTEH IVVCNKTSSI YIMTLQGQVV KSFSSGNREG GDFVAACVST KGDWIYCIGE DKKLYCFNYQ SGGLEHFMMV HEKDVIGITH HPHRNLLATY
501: SEDCTMKLWK P

Arabidopsis Description

SMU1SMU1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.