Factsheet for GSMUA_Achr9P08610_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P00500_001
GSMUA_Achr6P02720_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73720.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT1G73720.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT1G73720.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT1G73720.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P25450_001	Banana	nucleus	80.9	96.74
VIT_17s0000g08930.t01	Wine grape	cytosol	91.81	91.63
KRH43068	Soybean	nucleus	91.23	91.23
KRH59198	Soybean	endoplasmic reticulum	91.23	91.23
Solyc06g064830.2.1	Tomato	nucleus	89.86	89.69
PGSC0003DMT400013292	Potato	cytosol	89.67	89.49
TraesCS3D01G200300.1	Wheat	cytosol	88.69	88.01
Os01t0322800-01	Rice	nucleus	88.69	88.01
TraesCS3B01G226600.1	Wheat	cytosol	88.5	87.98
TraesCS3A01G197200.1	Wheat	nucleus	88.3	87.62
KXG32415	Sorghum	cytosol	87.72	87.04
Bra015971.1-P	Field mustard	cytosol	84.02	84.18
AT1G73720.1	Thale cress	cytosol	83.82	84.15
HORVU0Hr1G006640.1	Barley	cytosol	74.07	83.52
Zm00001d040689_P001	Maize	cytosol	88.11	81.0
KRH62407	Soybean	endoplasmic reticulum, extracellular	17.93	76.67
KRH63018	Soybean	endoplasmic reticulum, extracellular	16.57	74.56
CDY11094	Canola	cytosol	34.11	71.14
CDY41611	Canola	extracellular	12.09	68.89
KRH71579	Soybean	cytosol	27.49	64.98
GSMUA_Achr6P25470_001	Banana	cytosol	15.98	57.34

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:CTLH_C	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr9G08610_001	EnsemblPlants:GSMUA_Achr9P08610_001	EnsemblPlants:GSMUA_Achr9T08610_001	InterPro:IPR001680
InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH	UniProt:M0TYM0
PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896
PFscan:PS50897	PANTHER:PTHR22848	PANTHER:PTHR22848:SF0	SMART:SM00320	SMART:SM00667	SUPFAM:SSF50978
UniParc:UPI000295F486	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

WD40 repeat-containing protein SMU1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G08610_001]

Coordinates

chr9:-:5533796..5548185

Molecular Weight (calculated)

57809.2 Da

IEP (calculated)

6.853

GRAVY (calculated)

-0.329

Length

513 amino acids

Sequence
(BLAST)

001: MSTLEIEAPD VIKIVLQFCK ENSLHQTFQT LQSECQVSLN TVDSLETFVA DINSGRWDAI LPQVAQLKLP RKNLEDLYEQ IVLEMIELRE LDTARAILRQ
101: TQVMGIMKQE QPERYLRLEH LLVRTYFDPN EAYQESTKEK RRAQIAQALA AEVSVVPPSR LMALIGQALK WQQHQGLLPP GTQFDLFRGT AAMKQDEDDI
201: YPTTLAHPIK FGKKSHPECA RFSPDGQYLV SCSVDGFIEV WDYISGKLKK DLQYQADDAF MMHDDAVLCV DFSRDSEMLA SGSQDGKIKV WRIRTGQCLR
301: RLERAHSQGV TSIVFSRDGS QLLSASFDNT ARIHGLKSGK LLKEFRGHTS YVNDAIFSND GSRVITASSD CTVKVWDVKS TDCLQTFKPP PPLRGGDASV
401: NSVHLFPKNA EHIIVCNKTS SVYLMTLQGQ VVKSFSSGKR EGGDFVAACV SPKGEWIYCV GEDMNMYCFS HQSGKLEHLM KVHDKEVIGV THHPHRNLVV
501: TYGEDCAMKI WKP

Best Arabidopsis Sequence Match ( AT1G73720.1 )
(BLAST)

001: MALEIEARDV IKIMLQFCKE NSLNQTFQTL QSECQVSLNT VDSVETFISD INSGRWDSVL PQVSQLKLPR NKLEDLYEQI VLEMIELREL DTARAILRQT
101: QVMGVMKQEQ AERYLRMEHL LVRSYFDPHE AYGDSTKERK RAQIAQAVAA EVTVVPPSRL MALIGQALKW QQHQGLLPPG TQFDLFRGTA AMKQDVEDTH
201: PNVLTHTIKF GKKSHAECAR FSPDGQFLAS SSVDGFIEVW DYISGKLKKD LQYQADESFM MHDDPVLCID FSRDSEMLAS GSQDGKIKIW RIRTGVCIRR
301: FDAHSQGVTS LSFSRDGSQL LSTSFDQTAR IHGLKSGKLL KEFRGHTSYV NHAIFTSDGS RIITASSDCT VKVWDSKTTD CLQTFKPPPP LRGTDASVNS
401: IHLFPKNTEH IVVCNKTSSI YIMTLQGQVV KSFSSGNREG GDFVAACVST KGDWIYCIGE DKKLYCFNYQ SGGLEHFMMV HEKDVIGITH HPHRNLLATY
501: SEDCTMKLWK P

Arabidopsis Description

SMU1SMU1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.