Factsheet for HORVU0Hr1G006640.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU6Hr1G075650.1
HORVU7Hr1G038130.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73720.1	HORVU6Hr1G075650.1	AT3G47620.1	21798944
AT1G73720.1	HORVU7Hr1G038130.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G226600.1	Wheat	cytosol	94.73	83.53
TraesCS3A01G197200.1	Wheat	nucleus	94.73	83.37
TraesCS3D01G200300.1	Wheat	cytosol	94.51	83.17
Os01t0322800-01	Rice	nucleus	89.45	78.72
KXG32415	Sorghum	cytosol	88.79	78.14
GSMUA_Achr9P08610_001	Banana	cytosol	83.52	74.07
KRH43068	Soybean	nucleus	82.86	73.49
KRH59198	Soybean	endoplasmic reticulum	82.86	73.49
KRH62407	Soybean	endoplasmic reticulum, extracellular	19.34	73.33
PGSC0003DMT400013292	Potato	cytosol	82.64	73.15
VIT_17s0000g08930.t01	Wine grape	cytosol	82.42	72.96
Solyc06g064830.2.1	Tomato	nucleus	82.42	72.96
Zm00001d040689_P001	Maize	cytosol	89.23	72.76
GSMUA_Achr6P25450_001	Banana	nucleus	67.03	71.1
KRH63018	Soybean	endoplasmic reticulum, extracellular	17.8	71.05
Bra015971.1-P	Field mustard	cytosol	79.34	70.51
AT1G73720.1	Thale cress	cytosol	78.24	69.67
CDY41611	Canola	extracellular	12.75	64.44
KRH71579	Soybean	cytosol	22.86	47.93
CDY11094	Canola	cytosol	24.62	45.53

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A287DX33	InterPro:CTLH_C	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:HORVU0Hr1G006640	EnsemblPlants:HORVU0Hr1G006640.1	InterPro:IPR001680
InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH	PFAM:PF00400
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PFscan:PS50897
PANTHER:PTHR22848	PANTHER:PTHR22848:SF0	SMART:SM00320	SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978
UniParc:UPI000B4814E0	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

No Description!

Coordinates

chrchrUn:-:38453862..38461737

Molecular Weight (calculated)

51286.4 Da

IEP (calculated)

7.097

GRAVY (calculated)

-0.284

Length

455 amino acids

Sequence
(BLAST)

001: MASSTSTLEI EARDVVKIML QFCKENSLHQ TFQTLQNECQ VSLNTVDSMD TFIADINAGR WDAVLPQVAQ LKLPRKKLED LYEQIVLEMA ELRELDTARA
101: ILRQTQVMGV MKQEEPERYL RLEHLLVRTY FDLNEAYQES TKEKRRAQIA QAIASEVSVV PPARLMALIT QALKWQQHQG LLPPGTQFDL FRGTAAMKQD
201: EEEAYPTALS HQIKFGKKTH PECARFSPDG QYLVSCSVDG IIEVWDYVSG KLKKDLQYQA DESFMMHEDA VLCVDFSRDS EMLASGSQDG KIKVWRIRTG
301: QCLRRLERSH AKGVTSVAFS RDGTQILSAS FDTTARIHGL KSGKMLKEFR GHDSYVNYAI FSADGTRVIT ASSDCIVKVW DAKTADCLQS FKPPPPLRGG
401: DASVNSVHLF PKNSDHIVVC NKTSSIYIMT LQGQVYCYVH IPSCFSTVFL KSSIN

Best Arabidopsis Sequence Match ( AT1G73720.1 )
(BLAST)

001: MALEIEARDV IKIMLQFCKE NSLNQTFQTL QSECQVSLNT VDSVETFISD INSGRWDSVL PQVSQLKLPR NKLEDLYEQI VLEMIELREL DTARAILRQT
101: QVMGVMKQEQ AERYLRMEHL LVRSYFDPHE AYGDSTKERK RAQIAQAVAA EVTVVPPSRL MALIGQALKW QQHQGLLPPG TQFDLFRGTA AMKQDVEDTH
201: PNVLTHTIKF GKKSHAECAR FSPDGQFLAS SSVDGFIEVW DYISGKLKKD LQYQADESFM MHDDPVLCID FSRDSEMLAS GSQDGKIKIW RIRTGVCIRR
301: FDAHSQGVTS LSFSRDGSQL LSTSFDQTAR IHGLKSGKLL KEFRGHTSYV NHAIFTSDGS RIITASSDCT VKVWDSKTTD CLQTFKPPPP LRGTDASVNS
401: IHLFPKNTEH IVVCNKTSSI YIMTLQGQVV KSFSSGNREG GDFVAACVST KGDWIYCIGE DKKLYCFNYQ SGGLEHFMMV HEKDVIGITH HPHRNLLATY
501: SEDCTMKLWK P

Arabidopsis Description

SMU1SMU1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.