CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EES07255

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73720.1	EER88112	AT3G47620.1	21798944
AT1G73720.1	EES07255	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0322800-01	Rice	nucleus	94.2	94.2
TraesCS3D01G200300.1	Wheat	cytosol	93.81	93.81
TraesCS3A01G197200.1	Wheat	nucleus	93.62	93.62
TraesCS3B01G226600.1	Wheat	cytosol	93.42	93.6
Zm00001d040689_P001	Maize	cytosol	99.23	91.94
HORVU0Hr1G006640.1	Barley	cytosol	78.14	88.79
KRH59198	Soybean	endoplasmic reticulum	87.81	88.5
GSMUA_Achr6P25450_001	Banana	nucleus	73.31	88.34
KRH43068	Soybean	nucleus	87.62	88.3
GSMUA_Achr9P08610_001	Banana	cytosol	87.04	87.72
PGSC0003DMT400013292	Potato	cytosol	86.65	87.16
VIT_17s0000g08930.t01	Wine grape	cytosol	86.46	86.97
Solyc06g064830.2.1	Tomato	nucleus	86.27	86.77
AT1G73720.1	Thale cress	cytosol	82.59	83.56
Bra015971.1-P	Field mustard	cytosol	82.59	83.4
KRH62407	Soybean	endoplasmic reticulum, extracellular	16.63	71.67
CDY11094	Canola	cytosol	33.66	70.73
KRH63018	Soybean	endoplasmic reticulum, extracellular	15.47	70.18
CDY41611	Canola	extracellular	11.41	65.56
KRH71579	Soybean	cytosol	26.5	63.13

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A1B6Q3H2	InterPro:CTLH_C	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987
InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KXG32415
ProteinID:KXG32415	ProteinID:KXG32415.1	InterPro:LisH	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR22848	PANTHER:PTHR22848:SF0
SMART:SM00320	SMART:SM00667	SMART:SM00668	EnsemblPlantsGene:SORBI_3003G151200	SUPFAM:SSF50978	UniParc:UPI0001C80B55
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:15909852..15915520

Molecular Weight (calculated)

58294.9 Da

IEP (calculated)

7.210

GRAVY (calculated)

-0.329

Length

517 amino acids

Sequence
(BLAST)

001: MASSASTLEI EARDVVKIVL QFCKENSLQQ TFQTLQNECQ VSLNTVDSID TFIADINAGR WDAVLPQVAQ LKLPRKKLED LYEQIVLEMA ELRELDTARA
101: ILRQTQVMGV MKQEQPERYL RLEHLLVRTY FDANEAYQES TKEKRRALIA QAVASEVSVV PPSRLMALIG QALKWQQHQG LLPPGTQFDL FRGTAAMKQD
201: EEETYPTSLS HQIKFGKKTH PECARFSPDG QYLVSCSVDG IIEVWDYLSG KLKKDLQYQA DESFMMHEEP VLCVDFSRDS EMLASGAQDG MIKVWRIRTG
301: QCLRRLERAH SKGVTSVTFS RDGTQILSTS FDTTARVHGL KSGKMLKEFR GHTSYVNYAI FTTDGSRVIT ASSDCTVKVW DTKTTDCLHT FKPPPPLRGG
401: DASVNSVHLF PKNTDHIVVC NKTSSIFIMT LQGQVVKSFS SGKREGGDFV AASVSPKGEW IYCVGEDMNM YCFSYQSGKL EHLMKVHEKD VIGITHHPHR
501: NLVATIAEDC MMKIWKP

Best Arabidopsis Sequence Match ( AT1G73720.1 )
(BLAST)

001: MALEIEARDV IKIMLQFCKE NSLNQTFQTL QSECQVSLNT VDSVETFISD INSGRWDSVL PQVSQLKLPR NKLEDLYEQI VLEMIELREL DTARAILRQT
101: QVMGVMKQEQ AERYLRMEHL LVRSYFDPHE AYGDSTKERK RAQIAQAVAA EVTVVPPSRL MALIGQALKW QQHQGLLPPG TQFDLFRGTA AMKQDVEDTH
201: PNVLTHTIKF GKKSHAECAR FSPDGQFLAS SSVDGFIEVW DYISGKLKKD LQYQADESFM MHDDPVLCID FSRDSEMLAS GSQDGKIKIW RIRTGVCIRR
301: FDAHSQGVTS LSFSRDGSQL LSTSFDQTAR IHGLKSGKLL KEFRGHTSYV NHAIFTSDGS RIITASSDCT VKVWDSKTTD CLQTFKPPPP LRGTDASVNS
401: IHLFPKNTEH IVVCNKTSSI YIMTLQGQVV KSFSSGNREG GDFVAACVST KGDWIYCIGE DKKLYCFNYQ SGGLEHFMMV HEKDVIGITH HPHRNLLATY
501: SEDCTMKLWK P

Arabidopsis Description

SMU1SMU1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.