Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G200300.1 | Wheat | cytosol | 99.42 | 99.23 |
| TraesCS3A01G197200.1 | Wheat | nucleus | 99.42 | 99.23 |
| HORVU0Hr1G006640.1 | Barley | cytosol | 83.53 | 94.73 |
| Os01t0322800-01 | Rice | nucleus | 93.99 | 93.81 |
| KXG32415 | Sorghum | cytosol | 93.6 | 93.42 |
| GSMUA_Achr6P25450_001 | Banana | nucleus | 73.84 | 88.81 |
| GSMUA_Achr9P08610_001 | Banana | cytosol | 87.98 | 88.5 |
| KRH59198 | Soybean | endoplasmic reticulum | 87.21 | 87.72 |
| KRH43068 | Soybean | nucleus | 86.82 | 87.33 |
| Zm00001d040689_P001 | Maize | cytosol | 94.19 | 87.1 |
| PGSC0003DMT400013292 | Potato | cytosol | 86.63 | 86.97 |
| VIT_17s0000g08930.t01 | Wine grape | cytosol | 86.43 | 86.77 |
| Solyc06g064830.2.1 | Tomato | nucleus | 86.43 | 86.77 |
| Bra015971.1-P | Field mustard | cytosol | 82.36 | 83.01 |
| AT1G73720.1 | Thale cress | cytosol | 81.59 | 82.39 |
| KRH62407 | Soybean | endoplasmic reticulum, extracellular | 17.25 | 74.17 |
| KRH63018 | Soybean | endoplasmic reticulum, extracellular | 15.89 | 71.93 |
| CDY11094 | Canola | cytosol | 33.14 | 69.51 |
| CDY41611 | Canola | extracellular | 11.24 | 64.44 |
| KRH71579 | Soybean | cytosol | 25.58 | 60.83 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | InterPro:CTLH_C | ncoils:Coil | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR006594 | InterPro:IPR006595 | InterPro:IPR015943 |
| InterPro:IPR017986 | InterPro:LisH | PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PFscan:PS50896 | PFscan:PS50897 | PANTHER:PTHR22848 | PANTHER:PTHR22848:SF0 | SMART:SM00320 |
| SMART:SM00667 | SMART:SM00668 | SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS3B01G226600 | EnsemblPlants:TraesCS3B01G226600.1 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | TIGR:cd00200 | : |
Description
No Description!
Coordinates
chr3B:-:316611144..316623019
Molecular Weight (calculated)
58256.7 Da
IEP (calculated)
7.094
GRAVY (calculated)
-0.379
Length
516 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSTSTLEI EARDVVKIML QFCKENSLHQ TFQTLQNECQ VSLNTVDSMD TFIADINAGR WDAVLPQVAQ LKLPRKKLED LYEQIVLEMA ELRELDTARA
101: ILRQTQVMGV MKQEEPERYL RLEHLLVRTY FDPNEAYQES TKEKRRAQIA QAIASEVSVV PPARLMALIT QALKWQQHQG LLPPGTQFDL FRGTAAMKQD
201: EEEAYPTTLS HQIKFGKKTH PECARFSPDG QYLVSCSVDG IIEVWDYVSG KLKKDLQYQA DESFMMHEDA VLCVDFSRDS EMLASGSQDG KIKVWRIRTG
301: QCLRRLERSH AKGVTSVTFS RDGTQILSTS FDTTARIHGL KSGKMLKEFR GHDSYVNYAI FSSDGTRVIT ASSDCTVKVW DAKTADCLQS FKPPPLRGGD
401: ASVNSVHLFP KNSDHIVVCN KTSSIYIMTL QGQVVKSFSS GKREGGDFVA ASVSPKGEWI YCVGEDMNMY CFSHQSGKLE HLMKVHDKDV IGITHHPHRN
501: LVATYAEDCM MKIWKP
101: ILRQTQVMGV MKQEEPERYL RLEHLLVRTY FDPNEAYQES TKEKRRAQIA QAIASEVSVV PPARLMALIT QALKWQQHQG LLPPGTQFDL FRGTAAMKQD
201: EEEAYPTTLS HQIKFGKKTH PECARFSPDG QYLVSCSVDG IIEVWDYVSG KLKKDLQYQA DESFMMHEDA VLCVDFSRDS EMLASGSQDG KIKVWRIRTG
301: QCLRRLERSH AKGVTSVTFS RDGTQILSTS FDTTARIHGL KSGKMLKEFR GHDSYVNYAI FSSDGTRVIT ASSDCTVKVW DAKTADCLQS FKPPPLRGGD
401: ASVNSVHLFP KNSDHIVVCN KTSSIYIMTL QGQVVKSFSS GKREGGDFVA ASVSPKGEWI YCVGEDMNMY CFSHQSGKLE HLMKVHDKDV IGITHHPHRN
501: LVATYAEDCM MKIWKP
001: MALEIEARDV IKIMLQFCKE NSLNQTFQTL QSECQVSLNT VDSVETFISD INSGRWDSVL PQVSQLKLPR NKLEDLYEQI VLEMIELREL DTARAILRQT
101: QVMGVMKQEQ AERYLRMEHL LVRSYFDPHE AYGDSTKERK RAQIAQAVAA EVTVVPPSRL MALIGQALKW QQHQGLLPPG TQFDLFRGTA AMKQDVEDTH
201: PNVLTHTIKF GKKSHAECAR FSPDGQFLAS SSVDGFIEVW DYISGKLKKD LQYQADESFM MHDDPVLCID FSRDSEMLAS GSQDGKIKIW RIRTGVCIRR
301: FDAHSQGVTS LSFSRDGSQL LSTSFDQTAR IHGLKSGKLL KEFRGHTSYV NHAIFTSDGS RIITASSDCT VKVWDSKTTD CLQTFKPPPP LRGTDASVNS
401: IHLFPKNTEH IVVCNKTSSI YIMTLQGQVV KSFSSGNREG GDFVAACVST KGDWIYCIGE DKKLYCFNYQ SGGLEHFMMV HEKDVIGITH HPHRNLLATY
501: SEDCTMKLWK P
101: QVMGVMKQEQ AERYLRMEHL LVRSYFDPHE AYGDSTKERK RAQIAQAVAA EVTVVPPSRL MALIGQALKW QQHQGLLPPG TQFDLFRGTA AMKQDVEDTH
201: PNVLTHTIKF GKKSHAECAR FSPDGQFLAS SSVDGFIEVW DYISGKLKKD LQYQADESFM MHDDPVLCID FSRDSEMLAS GSQDGKIKIW RIRTGVCIRR
301: FDAHSQGVTS LSFSRDGSQL LSTSFDQTAR IHGLKSGKLL KEFRGHTSYV NHAIFTSDGS RIITASSDCT VKVWDSKTTD CLQTFKPPPP LRGTDASVNS
401: IHLFPKNTEH IVVCNKTSSI YIMTLQGQVV KSFSSGNREG GDFVAACVST KGDWIYCIGE DKKLYCFNYQ SGGLEHFMMV HEKDVIGITH HPHRNLLATY
501: SEDCTMKLWK P
Arabidopsis Description
SMU1SMU1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHG8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.