Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_17s0000g06020.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G73720.1 | VIT_17s0000g06020.t01 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH43068 | Soybean | nucleus | 93.19 | 93.37 |
| PGSC0003DMT400013292 | Potato | cytosol | 93.19 | 93.19 |
| Solyc06g064830.2.1 | Tomato | nucleus | 92.8 | 92.8 |
| KRH59198 | Soybean | endoplasmic reticulum | 92.61 | 92.79 |
| GSMUA_Achr9P08610_001 | Banana | cytosol | 91.63 | 91.81 |
| GSMUA_Achr6P25450_001 | Banana | nucleus | 76.07 | 91.14 |
| Os01t0322800-01 | Rice | nucleus | 87.55 | 87.04 |
| Bra015971.1-P | Field mustard | cytosol | 86.38 | 86.72 |
| TraesCS3D01G200300.1 | Wheat | cytosol | 87.16 | 86.65 |
| KXG32415 | Sorghum | cytosol | 86.97 | 86.46 |
| TraesCS3B01G226600.1 | Wheat | cytosol | 86.77 | 86.43 |
| AT1G73720.1 | Thale cress | cytosol | 85.8 | 86.3 |
| TraesCS3A01G197200.1 | Wheat | nucleus | 86.77 | 86.27 |
| HORVU0Hr1G006640.1 | Barley | cytosol | 72.96 | 82.42 |
| Zm00001d040689_P001 | Maize | cytosol | 87.74 | 80.82 |
| KRH62407 | Soybean | endoplasmic reticulum, extracellular | 17.9 | 76.67 |
| KRH63018 | Soybean | endoplasmic reticulum, extracellular | 16.54 | 74.56 |
| CDY11094 | Canola | cytosol | 35.41 | 73.98 |
| CDY41611 | Canola | extracellular | 11.87 | 67.78 |
| KRH71579 | Soybean | cytosol | 27.43 | 64.98 |
Protein Annotations
| EntrezGene:100241550 | wikigene:100241550 | Gene3D:2.130.10.10 | MapMan:35.1 | ProteinID:CBI14981 | ProteinID:CBI14981.3 |
| InterPro:CTLH_C | ncoils:Coil | UniProt:D7SHM1 | EMBL:FN594950 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR006594 | InterPro:IPR006595 | InterPro:IPR015943 |
| InterPro:IPR017986 | EntrezGene:LOC100241550 | wikigene:LOC100241550 | InterPro:LisH | PFAM:PF00400 | PRINTS:PR00320 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PFscan:PS50896 | PFscan:PS50897 | PANTHER:PTHR22848 |
| PANTHER:PTHR22848:SF0 | SMART:SM00320 | SMART:SM00667 | SMART:SM00668 | SUPFAM:SSF50978 | TIGR:TC59122 |
| UniParc:UPI00015C8B26 | ArrayExpress:VIT_17s0000g08930 | EnsemblPlantsGene:VIT_17s0000g08930 | EnsemblPlants:VIT_17s0000g08930.t01 | unigene:Vvi.12410 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | RefSeq:XP_002281533 | RefSeq:XP_002281533.1 |
Description
No Description!
Coordinates
chr17:-:10423722..10448084
Molecular Weight (calculated)
57957.3 Da
IEP (calculated)
7.264
GRAVY (calculated)
-0.349
Length
514 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTLEIEAR DVIKIVLQFC KENSLHQTFQ TLQSECQVSL NTVDSLETFI ADINSGRWDA ILPQVAQLKL PRKKLEDLYE QIVLEMIELR ELDTARAILR
101: QTQAMGVMKQ EQPERYLRLE HLLVRTYFDP HEAYQDSTKE KRRAQIAQAL AAEVSVVPPS RLMALIGQAL KWQQHQGLLP PGTQFDLFRG TAAMKQDVDD
201: MYPTTLGHTI KFGTKSHAEY ARFSPDGQFL VSCSVDGFIE VWDHISGKLK KDLQYQADET FMMHDDAVLC VDFSRDSEML ASGSQDGKIK VWRIRTGQCL
301: RRLERAHSQG VTSLVFSRDG SQILSASFDS TARIHGLKSG KLLKEFRGHS SYVNDAIFTN DGGRVVTASS DCTVKVWDVK TTDCLQTFKP PPPLRGGDAS
401: VNGVHLFPKN TDHIIVCNRT SSIYLMTLQG QVVKSFSSGK REGGDFVAAC VSPKGEWIYC VGEDRNIYCF SYQSGKLEHL MKVHEKDVIG VTHHPHRNLV
501: ATYSEDSTMK LWKP
101: QTQAMGVMKQ EQPERYLRLE HLLVRTYFDP HEAYQDSTKE KRRAQIAQAL AAEVSVVPPS RLMALIGQAL KWQQHQGLLP PGTQFDLFRG TAAMKQDVDD
201: MYPTTLGHTI KFGTKSHAEY ARFSPDGQFL VSCSVDGFIE VWDHISGKLK KDLQYQADET FMMHDDAVLC VDFSRDSEML ASGSQDGKIK VWRIRTGQCL
301: RRLERAHSQG VTSLVFSRDG SQILSASFDS TARIHGLKSG KLLKEFRGHS SYVNDAIFTN DGGRVVTASS DCTVKVWDVK TTDCLQTFKP PPPLRGGDAS
401: VNGVHLFPKN TDHIIVCNRT SSIYLMTLQG QVVKSFSSGK REGGDFVAAC VSPKGEWIYC VGEDRNIYCF SYQSGKLEHL MKVHEKDVIG VTHHPHRNLV
501: ATYSEDSTMK LWKP
001: MALEIEARDV IKIMLQFCKE NSLNQTFQTL QSECQVSLNT VDSVETFISD INSGRWDSVL PQVSQLKLPR NKLEDLYEQI VLEMIELREL DTARAILRQT
101: QVMGVMKQEQ AERYLRMEHL LVRSYFDPHE AYGDSTKERK RAQIAQAVAA EVTVVPPSRL MALIGQALKW QQHQGLLPPG TQFDLFRGTA AMKQDVEDTH
201: PNVLTHTIKF GKKSHAECAR FSPDGQFLAS SSVDGFIEVW DYISGKLKKD LQYQADESFM MHDDPVLCID FSRDSEMLAS GSQDGKIKIW RIRTGVCIRR
301: FDAHSQGVTS LSFSRDGSQL LSTSFDQTAR IHGLKSGKLL KEFRGHTSYV NHAIFTSDGS RIITASSDCT VKVWDSKTTD CLQTFKPPPP LRGTDASVNS
401: IHLFPKNTEH IVVCNKTSSI YIMTLQGQVV KSFSSGNREG GDFVAACVST KGDWIYCIGE DKKLYCFNYQ SGGLEHFMMV HEKDVIGITH HPHRNLLATY
501: SEDCTMKLWK P
101: QVMGVMKQEQ AERYLRMEHL LVRSYFDPHE AYGDSTKERK RAQIAQAVAA EVTVVPPSRL MALIGQALKW QQHQGLLPPG TQFDLFRGTA AMKQDVEDTH
201: PNVLTHTIKF GKKSHAECAR FSPDGQFLAS SSVDGFIEVW DYISGKLKKD LQYQADESFM MHDDPVLCID FSRDSEMLAS GSQDGKIKIW RIRTGVCIRR
301: FDAHSQGVTS LSFSRDGSQL LSTSFDQTAR IHGLKSGKLL KEFRGHTSYV NHAIFTSDGS RIITASSDCT VKVWDSKTTD CLQTFKPPPP LRGTDASVNS
401: IHLFPKNTEH IVVCNKTSSI YIMTLQGQVV KSFSSGNREG GDFVAACVST KGDWIYCIGE DKKLYCFNYQ SGGLEHFMMV HEKDVIGITH HPHRNLLATY
501: SEDCTMKLWK P
Arabidopsis Description
SMU1SMU1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHG8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.