Factsheet for Bra015971.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018126.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73720.1	Bra018126.1-P	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60136	Canola	cytosol	99.8	99.8
CDX73008	Canola	cytosol	99.61	99.61
AT1G73720.1	Thale cress	cytosol	91.8	91.98
KRH43068	Soybean	nucleus	87.3	87.13
KRH59198	Soybean	endoplasmic reticulum	87.11	86.94
VIT_17s0000g08930.t01	Wine grape	cytosol	86.72	86.38
PGSC0003DMT400013292	Potato	cytosol	85.35	85.02
Solyc06g064830.2.1	Tomato	nucleus	85.35	85.02
GSMUA_Achr6P25450_001	Banana	nucleus	70.7	84.38
GSMUA_Achr9P08610_001	Banana	cytosol	84.18	84.02
KXG32415	Sorghum	cytosol	83.4	82.59
TraesCS3B01G226600.1	Wheat	cytosol	83.01	82.36
Os01t0322800-01	Rice	nucleus	83.01	82.2
TraesCS3D01G200300.1	Wheat	cytosol	82.81	82.01
TraesCS3A01G197200.1	Wheat	nucleus	82.62	81.82
HORVU0Hr1G006640.1	Barley	cytosol	70.51	79.34
Zm00001d040689_P001	Maize	cytosol	83.79	76.88
KRH62407	Soybean	endoplasmic reticulum, extracellular	16.99	72.5
KRH63018	Soybean	endoplasmic reticulum, extracellular	15.62	70.18
KRH71579	Soybean	cytosol	25.39	59.91

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra015971	EnsemblPlants:Bra015971.1	EnsemblPlants:Bra015971.1-P	InterPro:CTLH_C
ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008380	GO:GO:0009987	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943
InterPro:IPR017986	InterPro:LisH	UniProt:M4DHJ4	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR22848	PANTHER:PTHR22848:SF0
SMART:SM00320	SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978	UniParc:UPI0002541D95	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

AT1G73720 (E=2e-282) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA07:+:20004923..20008639

Molecular Weight (calculated)

57831.0 Da

IEP (calculated)

6.969

GRAVY (calculated)

-0.333

Length

512 amino acids

Sequence
(BLAST)

001: MALEIEARDV IKIVLQFCKE NSLNQTFQTL QSECQVSLNT VDSVETFVSD INSGRWDSVL PQVSQLKLPR NKLEDLYEQI VLEMIELREL DTARAILRQT
101: QVMGVMKQEE PERYLRMEHL LVRSYFDPHE AYGDSTKERK RAQIAQAVAA EVTVVPPSRL MALVGQALKW QQHQGLLPPG TQFDLFRGTA AMKQDVEDTY
201: PTTLNHTIKF GTKSHAECAR FSPDGQFLVS SSVDGFIEVW DYISGKLKKD LQYQAEETFM MHDEAVLCID FSKDSEMLAS GSQDGKIKVW RIRTGLCFRR
301: LERAHSEGVT SLTFSRDGTQ LLSTSFDHTA RIHGLKSGKL LKEFRGHTSY VNNAIFTSDG TRVITASSDC TVKVWDSKTT DCLQTFKPPP SLRGSEASVN
401: SVHLFPKNTE HIVVCNKTSS IYIMTLQGQV VKSFSSGKRE GGDFVAACVS TKGDWIYCLG EDKKLYCFSY QTSGLEHFMM VHEKDVIGLS HHPHRNLIAT
501: YSADCTMKLW KP

Best Arabidopsis Sequence Match ( AT1G73720.1 )
(BLAST)

001: MALEIEARDV IKIMLQFCKE NSLNQTFQTL QSECQVSLNT VDSVETFISD INSGRWDSVL PQVSQLKLPR NKLEDLYEQI VLEMIELREL DTARAILRQT
101: QVMGVMKQEQ AERYLRMEHL LVRSYFDPHE AYGDSTKERK RAQIAQAVAA EVTVVPPSRL MALIGQALKW QQHQGLLPPG TQFDLFRGTA AMKQDVEDTH
201: PNVLTHTIKF GKKSHAECAR FSPDGQFLAS SSVDGFIEVW DYISGKLKKD LQYQADESFM MHDDPVLCID FSRDSEMLAS GSQDGKIKIW RIRTGVCIRR
301: FDAHSQGVTS LSFSRDGSQL LSTSFDQTAR IHGLKSGKLL KEFRGHTSYV NHAIFTSDGS RIITASSDCT VKVWDSKTTD CLQTFKPPPP LRGTDASVNS
401: IHLFPKNTEH IVVCNKTSSI YIMTLQGQVV KSFSSGNREG GDFVAACVST KGDWIYCIGE DKKLYCFNYQ SGGLEHFMMV HEKDVIGITH HPHRNLLATY
501: SEDCTMKLWK P

Arabidopsis Description

SMU1SMU1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.