Factsheet for Os01t0322800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 19621931
cytosol: 19685898
nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0747400-01
Os06t0226700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73720.1	Os02t0747400-01	AT3G47620.1	21798944
AT1G73720.1	Os06t0226700-01	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G200300.1	Wheat	cytosol	94.2	94.2
KXG32415	Sorghum	cytosol	94.2	94.2
TraesCS3A01G197200.1	Wheat	nucleus	94.0	94.0
TraesCS3B01G226600.1	Wheat	cytosol	93.81	93.99
HORVU0Hr1G006640.1	Barley	cytosol	78.72	89.45
GSMUA_Achr6P25450_001	Banana	nucleus	73.89	89.04
GSMUA_Achr9P08610_001	Banana	cytosol	88.01	88.69
KRH59198	Soybean	endoplasmic reticulum	87.62	88.3
PGSC0003DMT400013292	Potato	cytosol	87.43	87.94
KRH43068	Soybean	nucleus	87.23	87.91
Zm00001d040689_P001	Maize	cytosol	94.78	87.81
Solyc06g064830.2.1	Tomato	nucleus	87.23	87.74
VIT_17s0000g08930.t01	Wine grape	cytosol	87.04	87.55
Bra015971.1-P	Field mustard	cytosol	82.2	83.01
AT1G73720.1	Thale cress	cytosol	81.82	82.78
KRH62407	Soybean	endoplasmic reticulum, extracellular	17.02	73.33
KRH63018	Soybean	endoplasmic reticulum, extracellular	15.86	71.93
CDY11094	Canola	cytosol	33.66	70.73
CDY41611	Canola	extracellular	11.41	65.56
KRH71579	Soybean	cytosol	25.92	61.75

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EntrezGene:4326991	EMBL:AK121409	ProteinID:BAB21237.1	ProteinID:BAF04807.1
ProteinID:BAS71854.1	InterPro:CTLH_C	ncoils:Coil	ProteinID:EEE54447.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	InterPro:IPR001680
InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH	EnsemblPlantsGene:Os01g0322800
EnsemblPlants:Os01t0322800-01	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR22848	PANTHER:PTHR22848:SF0	UniProt:Q9AWQ3	SMART:SM00320
SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978	UniParc:UPI00000A1FEB	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015621621.1	:	:

Description

OsWD40-13WD40 repeat-like domain containing protein. (Os01t0322800-01)

Coordinates

chr1:-:12303210..12309435

Molecular Weight (calculated)

58202.4 Da

IEP (calculated)

7.350

GRAVY (calculated)

-0.413

Length

517 amino acids

Sequence
(BLAST)

001: MASSASTLEI EARDVVKIVL QFCKENSLQQ TFQTLQNECQ VSLNTVDSID TFIADINAGR WDAVLPQVAQ LKLPRKKLED LYEQIVLEMA ELRELDTARA
101: ILRQTQVMGV MKQEQPERYL RLEHLLVRTY FDPNEAYQES TKEKRRAQIS QAIASEVSVV PPSRLMALIG QALKWQQHQG LLPPGTQFDL FRGTAAMKQD
201: EEETYPTTLS HQTKFGKKTH PECARFSPDG QYLVSCSVDG IIEVWDYISG KLKKDLQYQA DESFMMHDDA VLSVDFSRDS EMLASGSQDG KIKVWRIRTG
301: QCLRRLERAH AKGVTSVTFS RDGTQILSSS FDTTARVHGL KSGKMLKEFR GHNSYVNCAI FSTDGSRVIT ASSDCTVKVW DTKTTDCLQT FKPPPPLRGG
401: DATVNSVHLS PKNSDHIIVC NKTSSIYIMT LQGQVVKSFS SGKREGGDFL AASVSPKGEW IYCVGEDMNM YCFSYQSGKL EHLMKVHDKD VIGITHHPHR
501: NLIATYAEDC TMKTWKP

Best Arabidopsis Sequence Match ( AT1G73720.1 )
(BLAST)

001: MALEIEARDV IKIMLQFCKE NSLNQTFQTL QSECQVSLNT VDSVETFISD INSGRWDSVL PQVSQLKLPR NKLEDLYEQI VLEMIELREL DTARAILRQT
101: QVMGVMKQEQ AERYLRMEHL LVRSYFDPHE AYGDSTKERK RAQIAQAVAA EVTVVPPSRL MALIGQALKW QQHQGLLPPG TQFDLFRGTA AMKQDVEDTH
201: PNVLTHTIKF GKKSHAECAR FSPDGQFLAS SSVDGFIEVW DYISGKLKKD LQYQADESFM MHDDPVLCID FSRDSEMLAS GSQDGKIKIW RIRTGVCIRR
301: FDAHSQGVTS LSFSRDGSQL LSTSFDQTAR IHGLKSGKLL KEFRGHTSYV NHAIFTSDGS RIITASSDCT VKVWDSKTTD CLQTFKPPPP LRGTDASVNS
401: IHLFPKNTEH IVVCNKTSSI YIMTLQGQVV KSFSSGNREG GDFVAACVST KGDWIYCIGE DKKLYCFNYQ SGGLEHFMMV HEKDVIGITH HPHRNLLATY
501: SEDCTMKLWK P

Arabidopsis Description

SMU1SMU1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.