CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH54542
KRH56919
KRH63357

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73720.1	KRH03466	AT3G47620.1	21798944
AT1G73720.1	KRH54542	AT3G47620.1	21798944
AT1G73720.1	KRH56919	AT3G47620.1	21798944
AT1G73720.1	KRH63357	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43068	Soybean	nucleus	99.03	99.03
VIT_17s0000g08930.t01	Wine grape	cytosol	92.79	92.61
GSMUA_Achr6P25450_001	Banana	nucleus	76.41	91.38
GSMUA_Achr9P08610_001	Banana	cytosol	91.23	91.23
PGSC0003DMT400013292	Potato	cytosol	89.67	89.49
Solyc06g064830.2.1	Tomato	nucleus	89.28	89.11
KXG32415	Sorghum	cytosol	88.5	87.81
Os01t0322800-01	Rice	nucleus	88.3	87.62
TraesCS3D01G200300.1	Wheat	cytosol	88.11	87.43
CDY60136	Canola	cytosol	87.13	87.3
TraesCS3B01G226600.1	Wheat	cytosol	87.72	87.21
Bra015971.1-P	Field mustard	cytosol	86.94	87.11
CDX73008	Canola	cytosol	86.94	87.11
TraesCS3A01G197200.1	Wheat	nucleus	87.72	87.04
AT1G73720.1	Thale cress	cytosol	86.55	86.89
HORVU0Hr1G006640.1	Barley	cytosol	73.49	82.86
Zm00001d040689_P001	Maize	cytosol	88.89	81.72
KRH62407	Soybean	endoplasmic reticulum, extracellular	19.1	81.67
KRH63018	Soybean	endoplasmic reticulum, extracellular	17.74	79.82
KRH71579	Soybean	cytosol	29.82	70.51

Protein Annotations

EntrezGene:100775852	Gene3D:2.130.10.10	MapMan:35.1	EMBL:ACUP02003303	InterPro:CTLH_C	ncoils:Coil
InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_05G170500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1K4C0
InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH59198
ProteinID:KRH59198	ProteinID:KRH59198.1	InterPro:LisH	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR22848	PANTHER:PTHR22848:SF0
SMART:SM00320	SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978	UniParc:UPI0001CAA52F	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:+:36075967..36084428

Molecular Weight (calculated)

57949.3 Da

IEP (calculated)

6.931

GRAVY (calculated)

-0.326

Length

513 amino acids

Sequence
(BLAST)

001: MSTLEIEARD VIKIVLQFCK ENSLHQTFQM LQNECQVSLN TVDSIETFVA DINSGRWDAI LPQVSQLKLP RNKLEDLYEQ IVLEMIELRE LDTARAILRQ
101: TQVMGVMKQE QPERYLRLDH LLVRTYFDPN EAYQDSTKEK RRAQIAQAIA AEVTVVPPSR LMALIGQALK WQQHQGLLPP GTQFDLFRGT AAMKQDVDDM
201: YPTTLSHTIK FGTKSHAECA CFSPDGQFLV SCSVDGFIEV WDYISGKLKK DLQYQADEVF MMHDDAVLCV DFSRDSEMLA SGSQDGKIKV WRIRTGQCLR
301: RLERAHSQGV TSVSFSRDGS QLLSTSFDST ARIHGLKSGK MLKEFRGHTS YVNDAIFTND GSRVITASSD CTIKVWDVKT TDCIQTFKPP PPLRGGDASV
401: NSVHIFPKNT DHIVVCNKTS SIYIMTLQGQ VVKSFSSGKR EGGDFVAACV SPKGEWIYCV GEDRNMYCFS YQSGKLEHLM KVHEKEVIGV THHPHRNLVA
501: TFSEDCTMKS WKP

Best Arabidopsis Sequence Match ( AT1G73720.1 )
(BLAST)

001: MALEIEARDV IKIMLQFCKE NSLNQTFQTL QSECQVSLNT VDSVETFISD INSGRWDSVL PQVSQLKLPR NKLEDLYEQI VLEMIELREL DTARAILRQT
101: QVMGVMKQEQ AERYLRMEHL LVRSYFDPHE AYGDSTKERK RAQIAQAVAA EVTVVPPSRL MALIGQALKW QQHQGLLPPG TQFDLFRGTA AMKQDVEDTH
201: PNVLTHTIKF GKKSHAECAR FSPDGQFLAS SSVDGFIEVW DYISGKLKKD LQYQADESFM MHDDPVLCID FSRDSEMLAS GSQDGKIKIW RIRTGVCIRR
301: FDAHSQGVTS LSFSRDGSQL LSTSFDQTAR IHGLKSGKLL KEFRGHTSYV NHAIFTSDGS RIITASSDCT VKVWDSKTTD CLQTFKPPPP LRGTDASVNS
401: IHLFPKNTEH IVVCNKTSSI YIMTLQGQVV KSFSSGNREG GDFVAACVST KGDWIYCIGE DKKLYCFNYQ SGGLEHFMMV HEKDVIGITH HPHRNLLATY
501: SEDCTMKLWK P

Arabidopsis Description

SMU1SMU1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.