CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY24170
CDY36943

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73720.1	CDY24170	AT3G47620.1	21798944
AT1G73720.1	CDY36943	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60136	Canola	cytosol	99.8	99.8
Bra015971.1-P	Field mustard	cytosol	99.61	99.61
AT1G73720.1	Thale cress	cytosol	91.8	91.98
KRH43068	Soybean	nucleus	87.3	87.13
KRH59198	Soybean	endoplasmic reticulum	87.11	86.94
CDY11094	Canola	cytosol	39.84	82.93
CDY41611	Canola	extracellular	13.48	76.67
KRH62407	Soybean	endoplasmic reticulum, extracellular	16.99	72.5
KRH63018	Soybean	endoplasmic reticulum, extracellular	15.62	70.18
KRH71579	Soybean	cytosol	25.39	59.91

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlants:CDX73008	ProteinID:CDX73008	ProteinID:CDX73008.1	InterPro:CTLH_C
ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00103448001
InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH
PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896
PFscan:PS50897	PANTHER:PTHR22848	PANTHER:PTHR22848:SF0	SMART:SM00320	SMART:SM00667	SMART:SM00668
SUPFAM:SSF50978	UniParc:UPI0004EB7A14	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

BnaC06g34560D

Coordinates

chrLK031797:+:1641096..1645191

Molecular Weight (calculated)

57775.0 Da

IEP (calculated)

6.969

GRAVY (calculated)

-0.326

Length

512 amino acids

Sequence
(BLAST)

001: MALEIEARDV IKIVLQFCKE NSLNQTFQTL QSECQVSLNT VDSVETFVSD INSGRWDSVL PQVSQLKLPR NKLEDLYEQI VLEMIELREL DTARAILRQT
101: QVMGVMKQEE PERYLRMEHL LVRSYFDPHE AYGDSTKERK RAQIAQAVAA EVTVVPPSRL MALVGQALKW QQHQGLLPPG TQFDLFRGTA AMKQDVEDTY
201: PTTLNHTIKF GTKSHAECAR FSPDGQFLVS SSVDGFIEVW DYISGKLKKD LQYQAEETFM MHDEAVLCID FSKDSEMLAS GSQDGKIKVW RIRTGLCFRR
301: LERAHSEGVT SLTFSRDGTQ LLSTSFDHTA RIHGLKSGKL LKEFRGHTSY VNNAIFTSDG TRVITASSDC TVKVWDSKTT DCLQTFKPPP SLRGSEASVN
401: SVHLFPKNTE HIVVCNKTSS IYIMTLQGQV VKSFSSGKRE GGDFVAACVS TKGDWIYCLG EDKKLYCFSY QTGGLEHFMM VHEKDVIGLS HHPHRNLIAT
501: YSADCTMKLW KA

Best Arabidopsis Sequence Match ( AT1G73720.1 )
(BLAST)

001: MALEIEARDV IKIMLQFCKE NSLNQTFQTL QSECQVSLNT VDSVETFISD INSGRWDSVL PQVSQLKLPR NKLEDLYEQI VLEMIELREL DTARAILRQT
101: QVMGVMKQEQ AERYLRMEHL LVRSYFDPHE AYGDSTKERK RAQIAQAVAA EVTVVPPSRL MALIGQALKW QQHQGLLPPG TQFDLFRGTA AMKQDVEDTH
201: PNVLTHTIKF GKKSHAECAR FSPDGQFLAS SSVDGFIEVW DYISGKLKKD LQYQADESFM MHDDPVLCID FSRDSEMLAS GSQDGKIKIW RIRTGVCIRR
301: FDAHSQGVTS LSFSRDGSQL LSTSFDQTAR IHGLKSGKLL KEFRGHTSYV NHAIFTSDGS RIITASSDCT VKVWDSKTTD CLQTFKPPPP LRGTDASVNS
401: IHLFPKNTEH IVVCNKTSSI YIMTLQGQVV KSFSSGNREG GDFVAACVST KGDWIYCIGE DKKLYCFNYQ SGGLEHFMMV HEKDVIGITH HPHRNLLATY
501: SEDCTMKLWK P

Arabidopsis Description

SMU1SMU1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.