Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr11P... | |
| GSMUA_Achr6P25450_001 | |
| GSMUA_Achr9P08610_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P22760_001 | Banana | nucleus | 66.54 | 66.92 |
| GSMUA_Achr4P12730_001 | Banana | mitochondrion | 67.48 | 61.92 |
| VIT_11s0037g00810.t01 | Wine grape | cytosol | 55.14 | 53.35 |
| GSMUA_Achr4P11470_001 | Banana | plasma membrane | 55.7 | 52.84 |
| GSMUA_Achr5P04640_001 | Banana | nucleus | 50.09 | 51.84 |
| CDX76839 | Canola | nucleus | 40.56 | 50.7 |
| KRH63129 | Soybean | nucleus | 50.47 | 50.66 |
| Bra039229.1-P | Field mustard | nucleus | 40.37 | 50.35 |
| CDY34799 | Canola | nucleus | 40.37 | 50.35 |
| KRH54987 | Soybean | nucleus | 50.09 | 50.28 |
| AT2G24100.1 | Thale cress | nucleus | 42.24 | 48.5 |
| Solyc07g005990.2.1 | Tomato | cytosol | 47.48 | 47.65 |
| PGSC0003DMT400029158 | Potato | cytosol | 46.92 | 47.09 |
| KRH03001 | Soybean | cytosol | 43.36 | 47.06 |
| PGSC0003DMT400036859 | Potato | cytosol | 44.86 | 46.42 |
| Solyc03g117680.2.1 | Tomato | cytosol | 46.17 | 46.25 |
| KRH72344 | Soybean | cytosol | 45.79 | 45.79 |
| VIT_09s0018g01680.t01 | Wine grape | cytosol | 44.67 | 45.01 |
| KRH58482 | Soybean | mitochondrion | 32.15 | 43.11 |
| PGSC0003DMT400074432 | Potato | nucleus | 40.19 | 42.41 |
| KRH44588 | Soybean | cytosol | 46.73 | 41.39 |
| Solyc06g068540.2.1 | Tomato | cytosol | 40.37 | 40.99 |
| Bra024044.1-P | Field mustard | nucleus | 43.18 | 40.67 |
| KRH47309 | Soybean | nucleus | 45.42 | 40.57 |
| CDY39241 | Canola | cytosol | 42.8 | 40.39 |
| CDX68693 | Canola | cytosol | 41.87 | 40.36 |
| CDX72268 | Canola | nucleus | 42.24 | 39.93 |
| CDY23256 | Canola | nucleus | 40.19 | 39.89 |
| CDY28214 | Canola | cytosol | 42.24 | 39.51 |
| Bra011221.1-P | Field mustard | nucleus | 41.87 | 39.37 |
| CDY36470 | Canola | nucleus | 40.75 | 39.35 |
| AT4G30780.1 | Thale cress | nucleus | 42.99 | 39.05 |
| Bra010274.1-P | Field mustard | cytosol | 40.37 | 38.85 |
| CDY28207 | Canola | cytosol | 11.78 | 37.06 |
| Bra011214.1-P | Field mustard | cytosol | 11.78 | 37.06 |
| KRH28821 | Soybean | peroxisome | 28.97 | 36.3 |
| GSMUA_Achr11P... | Banana | cytosol | 14.77 | 23.37 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P05930_001 | EnsemblPlants:GSMUA_Achr4T05930_001 | EnsemblPlantsGene:GSMUA_Achr4G05930_001 | PANTHER:PTHR33494 | PANTHER:PTHR33494:SF1 | UniParc:UPI000296E77A |
| UniProt:M0SLG0 | MapMan:35.2 | : | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G05930_001]
Coordinates
chr4:+:4584379..4589637
Molecular Weight (calculated)
59801.4 Da
IEP (calculated)
5.529
GRAVY (calculated)
-0.633
Length
535 amino acids
Sequence
(BLAST)
(BLAST)
001: MVQLMSYGKL RPDSELPIKK LPAPVKVETE DQLEDEHGPP DKRFKMARPP PPPQQWETGE TMPPTDAIEH NLLNEPSPLG LRLRKSPSLL NLIQMRLSQA
101: NAAVGSGIMK NESLEDKNKK DTRSTCALAN TEKIKASNFP ASLLRIGAWE YASRYEGDLV AKCYFAKRKL VWEILEGGLK SKIEIQWSDI TALRATCPEN
201: GPETLNIVLA RQPLFFRETN PQPRKHTLWQ ATSDFTNGQA SMHRRHFLQC PQGLLNKNFE KLIQCDPRLY ALSQEPDNIL KSPFFEPRGS VFDHQEEYKC
301: HPFDKLKDEC GSAIQEFQDS ASTSVGTSTS FKSDVRDSVG TFSDVSKGEI HSPSSGKIST VETEVTKNQN CWNQWKFPGL KPSMSINDFV NKIGHCISEQ
401: ISWGNPELSG MVIPDKEMLE ELVQSLFSDS QLPASDEKSV MSKVNSFCSL LQKDVGTVHS QQSNAGDNDF HDGTSEKHTP PTEGEFNDIS GAKTAASISR
501: KDSFGELLMH LPRIASLPQF LFNIAEDEED TSPSN
101: NAAVGSGIMK NESLEDKNKK DTRSTCALAN TEKIKASNFP ASLLRIGAWE YASRYEGDLV AKCYFAKRKL VWEILEGGLK SKIEIQWSDI TALRATCPEN
201: GPETLNIVLA RQPLFFRETN PQPRKHTLWQ ATSDFTNGQA SMHRRHFLQC PQGLLNKNFE KLIQCDPRLY ALSQEPDNIL KSPFFEPRGS VFDHQEEYKC
301: HPFDKLKDEC GSAIQEFQDS ASTSVGTSTS FKSDVRDSVG TFSDVSKGEI HSPSSGKIST VETEVTKNQN CWNQWKFPGL KPSMSINDFV NKIGHCISEQ
401: ISWGNPELSG MVIPDKEMLE ELVQSLFSDS QLPASDEKSV MSKVNSFCSL LQKDVGTVHS QQSNAGDNDF HDGTSEKHTP PTEGEFNDIS GAKTAASISR
501: KDSFGELLMH LPRIASLPQF LFNIAEDEED TSPSN
001: MVEMMRSENH LRQASKHRNN NFPVKLEIIE DSLEEEHAPL NKRSKLWSNG TSVSKFSLLE EPSPLGLSLK KSPSFQELIE MKLSQSGDDS NSVKKESFGF
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
Arabidopsis Description
ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9ZUI1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.