Factsheet for GSMUA_Achr4P12730_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr6P25450_001
GSMUA_Achr9P08610_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24100.1	GSMUA_Achr6P25450_001	AT1G73720.1	21798944
AT2G24100.1	GSMUA_Achr9P08610_001	AT1G73720.1	21798944
AT4G30780.1	GSMUA_Achr10P...	AT5G22360.1	21798944
AT4G30780.1	GSMUA_Achr11P...	AT5G22360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P05930_001	Banana	cytosol	61.92	67.48
GSMUA_Achr9P22760_001	Banana	nucleus	59.18	64.85
GSMUA_Achr4P11470_001	Banana	plasma membrane	51.97	53.72
VIT_11s0037g00810.t01	Wine grape	cytosol	50.09	52.8
GSMUA_Achr5P04640_001	Banana	nucleus	45.97	51.84
KRH63129	Soybean	nucleus	47.34	51.78
Bra039229.1-P	Field mustard	nucleus	37.91	51.52
CDY34799	Canola	nucleus	37.91	51.52
CDX76839	Canola	nucleus	37.56	51.17
KRH54987	Soybean	nucleus	46.48	50.84
Solyc07g005990.2.1	Tomato	cytosol	44.77	48.97
PGSC0003DMT400029158	Potato	cytosol	44.77	48.97
AT2G24100.1	Thale cress	nucleus	39.11	48.93
PGSC0003DMT400036859	Potato	cytosol	41.85	47.2
Solyc03g117680.2.1	Tomato	cytosol	42.88	46.82
KRH03001	Soybean	cytosol	39.11	46.25
VIT_09s0018g01680.t01	Wine grape	cytosol	41.51	45.57
KRH72344	Soybean	cytosol	41.34	45.05
PGSC0003DMT400074432	Potato	nucleus	38.94	44.77
KRH58482	Soybean	mitochondrion	29.85	43.61
Solyc06g068540.2.1	Tomato	cytosol	38.77	42.88
Bra024044.1-P	Field mustard	nucleus	40.82	41.9
CDY39241	Canola	cytosol	40.48	41.62
CDY23256	Canola	nucleus	38.42	41.56
CDX68693	Canola	cytosol	39.45	41.44
CDX72268	Canola	nucleus	40.14	41.34
CDY36470	Canola	nucleus	38.94	40.97
KRH47309	Soybean	nucleus	41.85	40.73
KRH44588	Soybean	cytosol	42.2	40.73
Bra010274.1-P	Field mustard	cytosol	38.42	40.29
Bra011221.1-P	Field mustard	nucleus	39.11	40.07
CDY28214	Canola	cytosol	39.28	40.03
Bra011214.1-P	Field mustard	cytosol	11.49	39.41
CDY28207	Canola	cytosol	11.49	39.41
AT4G30780.1	Thale cress	nucleus	39.79	39.39
KRH28821	Soybean	peroxisome	25.9	35.36
GSMUA_Achr11P...	Banana	cytosol	13.21	22.78

Protein Annotations

EnsemblPlants:GSMUA_Achr4P12730_001	EnsemblPlants:GSMUA_Achr4T12730_001	EnsemblPlantsGene:GSMUA_Achr4G12730_001	PANTHER:PTHR33494	PANTHER:PTHR33494:SF1	SEG:seg
UniParc:UPI0002954F08	UniProt:M0SND8	MapMan:35.2	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G12730_001]

Coordinates

chr4:+:9427408..9431784

Molecular Weight (calculated)

65158.4 Da

IEP (calculated)

5.898

GRAVY (calculated)

-0.513

Length

583 amino acids

Sequence
(BLAST)

001: MLTCLYPQSR RRTKRLTAWR RCGDLRSRAF GQPFPLLDYL MVQLRSYEKL RPDSGLPITK PTPAPAAAGV KLEIEDQLED EHGPLDKRPK MDTSPLLPWG
101: IGGSMPPTEL IQNNLLNEPS PLGLHLRKSP SLLDLIQMRL SQASASVKSS VMRNESLEDV KNEDFKSTGA LANIEKMKAS NFPASLLRIG TWEYASRYEG
201: DLVAKCYFAK RKLVWEILEG GLKSKIEVQW SDITALKATC PEHGPGTLDL VLARQPLFFR ETNPQPRKHT LWQATSDFTD GQASKHRRHF LQCPQGLLNK
301: HFEKLIQCDP RLYALSQELD IILKSPFFEP KISMFEDPDE YKCHPFDKLK DEYGSAIQNF QDSALACAGT SISAKSEIRE STGALSDISI GKIHSPSSVM
401: DHISVETDER KNHNCWDELK YAGLKPSMSI SDFVSQIENC ISEQISSGNP QLPGTIPDKK MLEELAQCLF SDSQMPTSDE KTVMTKVNSF CCLLQKDAAS
501: VQSHQMNAGG TSADDSGSQD GVSEKHTHSL EDEFDNTSGL KTLANISRKD SFGELLMHLP RVASLPQFLF NITEDEEDSC PSN

Best Arabidopsis Sequence Match ( AT2G24100.1 )
(BLAST)

001: MVEMMRSENH LRQASKHRNN NFPVKLEIIE DSLEEEHAPL NKRSKLWSNG TSVSKFSLLE EPSPLGLSLK KSPSFQELIE MKLSQSGDDS NSVKKESFGF
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED

Arabidopsis Description

ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9ZUI1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.