Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g064830.2.1 | |
| Solyc06g074250.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24100.1 | Solyc06g064830.2.1 | AT1G73720.1 | 21798944 |
| AT4G30780.1 | Solyc06g074250.2.1 | AT5G22360.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400029158 | Potato | cytosol | 94.93 | 94.93 |
| VIT_11s0037g00810.t01 | Wine grape | cytosol | 58.54 | 56.42 |
| HORVU0Hr1G040420.1 | Barley | cytosol | 17.64 | 54.97 |
| KRH63129 | Soybean | nucleus | 53.28 | 53.28 |
| Bra039229.1-P | Field mustard | nucleus | 42.59 | 52.91 |
| CDX76839 | Canola | nucleus | 42.4 | 52.8 |
| CDY34799 | Canola | nucleus | 42.4 | 52.68 |
| KRH54987 | Soybean | nucleus | 51.97 | 51.97 |
| Solyc03g117680.2.1 | Tomato | cytosol | 51.78 | 51.69 |
| AT2G24100.1 | Thale cress | nucleus | 44.28 | 50.64 |
| KRH72344 | Soybean | cytosol | 50.66 | 50.47 |
| Os06t0186600-02 | Rice | cytosol | 36.59 | 50.0 |
| GSMUA_Achr5P04640_001 | Banana | nucleus | 47.65 | 49.13 |
| HORVU3Hr1G034290.1 | Barley | cytosol | 43.53 | 48.95 |
| KRH03001 | Soybean | cytosol | 44.65 | 48.28 |
| KRH58482 | Soybean | mitochondrion | 35.65 | 47.62 |
| GSMUA_Achr9P22760_001 | Banana | nucleus | 47.47 | 47.56 |
| GSMUA_Achr4P05930_001 | Banana | cytosol | 47.65 | 47.48 |
| Os02t0793800-00 | Rice | cytosol | 25.52 | 46.9 |
| KXG19496 | Sorghum | nucleus | 46.9 | 46.64 |
| Zm00001d045084_P002 | Maize | cytosol | 46.9 | 46.47 |
| Zm00001d037085_P005 | Maize | nucleus | 46.72 | 46.2 |
| HORVU7Hr1G031130.2 | Barley | nucleus | 45.78 | 46.12 |
| TraesCS7B01G055300.1 | Wheat | cytosol | 45.4 | 45.66 |
| TraesCS7D01G153200.1 | Wheat | nucleus | 45.03 | 45.03 |
| Solyc06g068540.2.1 | Tomato | cytosol | 44.28 | 44.78 |
| GSMUA_Achr4P12730_001 | Banana | mitochondrion | 48.97 | 44.77 |
| TraesCS7A01G151300.1 | Wheat | nucleus | 44.65 | 44.65 |
| Bra024044.1-P | Field mustard | nucleus | 46.72 | 43.84 |
| CDY39241 | Canola | cytosol | 46.34 | 43.56 |
| CDY23256 | Canola | nucleus | 43.71 | 43.23 |
| CDX72268 | Canola | nucleus | 45.78 | 43.11 |
| CDX68693 | Canola | cytosol | 44.84 | 43.06 |
| AT4G30780.1 | Thale cress | nucleus | 46.72 | 42.27 |
| CDY36470 | Canola | nucleus | 43.9 | 42.24 |
| Bra010274.1-P | Field mustard | cytosol | 43.9 | 42.09 |
| KXG31260 | Sorghum | cytosol | 39.4 | 42.08 |
| CDY28214 | Canola | cytosol | 44.84 | 41.78 |
| Bra011221.1-P | Field mustard | nucleus | 44.47 | 41.65 |
| Zm00001d052047_P001 | Maize | nucleus | 37.34 | 40.78 |
| GSMUA_Achr4P11470_001 | Banana | plasma membrane | 42.96 | 40.6 |
| CDY28207 | Canola | cytosol | 12.38 | 38.82 |
| Bra011214.1-P | Field mustard | cytosol | 12.38 | 38.82 |
| TraesCS6B01G387700.1 | Wheat | mitochondrion | 31.52 | 34.85 |
| TraesCS6A01G354900.1 | Wheat | mitochondrion | 31.14 | 34.37 |
| TraesCS6D01G337100.2 | Wheat | mitochondrion | 30.39 | 32.14 |
| Solyc01g100440.1.1 | Tomato | nucleus | 22.7 | 23.27 |
Protein Annotations
| EnsemblPlants:Solyc07g005990.2.1 | EnsemblPlantsGene:Solyc07g005990.2 | PANTHER:PTHR33494 | PANTHER:PTHR33494:SF1 | SEG:seg | UniParc:UPI000276C3A0 |
| UniProt:K4CB70 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr7:-:839251..845772
Molecular Weight (calculated)
58178.2 Da
IEP (calculated)
4.772
GRAVY (calculated)
-0.498
Length
533 amino acids
Sequence
(BLAST)
(BLAST)
001: MVELMMSSGM ASFPVKYEVE DPLEDEHGPL TKRSKLSSAS SSFNQWDAGN DELPVPPPEY NPLDEPSPLG LKLRKSPSLL DLITMRLSQN NASSTAPENP
101: TSVSNTGTKG ASTSVATDKL KASNFSGSLL RIGTWEYASR YEGDLVAKCY FAKHKLVWEI LEGGLKSKIE IQWSDIMGLK ASCPENGPGS LTLVLARQPL
201: FFKETNPQPR KHTLWQATSD FTGGQASLNR QHFLQCPVGV LNKHYEKLIQ CDVRLNSLSK QPELALESPY FDTKATVFEN LDELNDHGLD PVGSGKGSPL
301: SSIQDAASPA AAQSSSVSFE QPDLLGAAPE HLSRDAPSPS SVMDTHAVRD NANSIGYDSN RMRNLEQLKV PGLRPSMSMT DLVSHFEICI SQQINSGSLQ
401: SDEALECKGM LEDIAQMWLS DTQCTPASDE KSLMKKVNSL CCLLQDPIAS HEPQLNGENH LQNPVQSNDA CSSSACENDG NNKENTKDSV GSKPTPSIPR
501: IDSFGDLLLH LPRIASLPKF LFNIVEDDEN QSR
101: TSVSNTGTKG ASTSVATDKL KASNFSGSLL RIGTWEYASR YEGDLVAKCY FAKHKLVWEI LEGGLKSKIE IQWSDIMGLK ASCPENGPGS LTLVLARQPL
201: FFKETNPQPR KHTLWQATSD FTGGQASLNR QHFLQCPVGV LNKHYEKLIQ CDVRLNSLSK QPELALESPY FDTKATVFEN LDELNDHGLD PVGSGKGSPL
301: SSIQDAASPA AAQSSSVSFE QPDLLGAAPE HLSRDAPSPS SVMDTHAVRD NANSIGYDSN RMRNLEQLKV PGLRPSMSMT DLVSHFEICI SQQINSGSLQ
401: SDEALECKGM LEDIAQMWLS DTQCTPASDE KSLMKKVNSL CCLLQDPIAS HEPQLNGENH LQNPVQSNDA CSSSACENDG NNKENTKDSV GSKPTPSIPR
501: IDSFGDLLLH LPRIASLPKF LFNIVEDDEN QSR
001: MVEMRKSGGL RPESESAARC RDELPVKLEI AEDDLEEEHG PLNKRSRLWS PGTSSSTMAP AKYNPLDEPS PLGLSLKKSP SLLELIQMKI THCGDPKAAE
101: TLKAGALGSG LKRESKTIAA AASVGPTLAP GSIEKLKASN FPASLLKIGQ WEYKSRYEGD LVAKCYFAKH KLVWEVLEQG LKSKIEIQWS DIMALKANCP
201: EDGPGTLTLV LARQPLFFRE TNPQPRKHTL WQATSDFTDG QASMNRQHFL QCAQGIMNKH FEKLVQCDHR LFHLSRQPEI AIDSPYFDAR QSIFEDPSES
301: KGHPFGNLNL STGPSISGTQ NLASPVGAQS SSEHMYLSHE APSPSSVIDA RANEGIGGSE AVNSRNRTDC GQIEAPGIHQ SMSLSDFLAV LCDTKNTTDL
401: NLADDVDGLH QSMSVSDFVA YLSDSRNITD SDQIKVPGLH QSMSVSDFVG LLSDSAGGSH PEHMEKFEIM KQQLLSDNIQ FEAPDEKSLM PRVNSLFNLL
501: YKDPNVAANS QLNTEMSVGL KSEPKGIVSD NNNNNNNNNR VLDTASSSKP QGMLRKDSFS DLLLHLPRIT SLPKFLSNIS EEDGDAYNR
101: TLKAGALGSG LKRESKTIAA AASVGPTLAP GSIEKLKASN FPASLLKIGQ WEYKSRYEGD LVAKCYFAKH KLVWEVLEQG LKSKIEIQWS DIMALKANCP
201: EDGPGTLTLV LARQPLFFRE TNPQPRKHTL WQATSDFTDG QASMNRQHFL QCAQGIMNKH FEKLVQCDHR LFHLSRQPEI AIDSPYFDAR QSIFEDPSES
301: KGHPFGNLNL STGPSISGTQ NLASPVGAQS SSEHMYLSHE APSPSSVIDA RANEGIGGSE AVNSRNRTDC GQIEAPGIHQ SMSLSDFLAV LCDTKNTTDL
401: NLADDVDGLH QSMSVSDFVA YLSDSRNITD SDQIKVPGLH QSMSVSDFVG LLSDSAGGSH PEHMEKFEIM KQQLLSDNIQ FEAPDEKSLM PRVNSLFNLL
501: YKDPNVAANS QLNTEMSVGL KSEPKGIVSD NNNNNNNNNR VLDTASSSKP QGMLRKDSFS DLLLHLPRIT SLPKFLSNIS EEDGDAYNR
Arabidopsis Description
ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9SUG8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.