Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0322800-01 | |
| Os10t0154000-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24100.1 | Os01t0322800-01 | AT1G73720.1 | 21798944 |
| AT4G30780.1 | Os10t0154000-01 | AT5G22360.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G034290.1 | Barley | cytosol | 77.69 | 63.92 |
| Zm00001d045084_P002 | Maize | cytosol | 80.26 | 58.18 |
| KXG19496 | Sorghum | nucleus | 79.74 | 58.02 |
| Zm00001d037085_P005 | Maize | nucleus | 78.97 | 57.14 |
| TraesCS7B01G055300.1 | Wheat | cytosol | 77.18 | 56.79 |
| HORVU7Hr1G031130.2 | Barley | nucleus | 76.92 | 56.71 |
| TraesCS7D01G153200.1 | Wheat | nucleus | 76.67 | 56.1 |
| TraesCS7A01G151300.1 | Wheat | nucleus | 76.67 | 56.1 |
| Os02t0793800-00 | Rice | cytosol | 33.85 | 45.52 |
| GSMUA_Achr5P04640_001 | Banana | nucleus | 55.38 | 41.78 |
| KRH58482 | Soybean | mitochondrion | 41.54 | 40.6 |
| VIT_11s0037g00810.t01 | Wine grape | cytosol | 55.13 | 38.88 |
| KRH63129 | Soybean | nucleus | 52.31 | 38.27 |
| PGSC0003DMT400036859 | Potato | cytosol | 50.51 | 38.1 |
| Solyc03g117680.2.1 | Tomato | cytosol | 50.77 | 37.08 |
| KRH54987 | Soybean | nucleus | 50.51 | 36.96 |
| VIT_09s0018g01680.t01 | Wine grape | cytosol | 50.0 | 36.72 |
| AT2G24100.1 | Thale cress | nucleus | 43.85 | 36.7 |
| PGSC0003DMT400029158 | Potato | cytosol | 50.0 | 36.59 |
| Solyc07g005990.2.1 | Tomato | cytosol | 50.0 | 36.59 |
| KRH28821 | Soybean | peroxisome | 40.0 | 36.53 |
| PGSC0003DMT400074432 | Potato | nucleus | 47.18 | 36.29 |
| CDX76839 | Canola | nucleus | 39.49 | 35.98 |
| KRH03001 | Soybean | cytosol | 45.13 | 35.7 |
| CDY34799 | Canola | nucleus | 39.23 | 35.66 |
| Bra039229.1-P | Field mustard | nucleus | 39.23 | 35.66 |
| Solyc06g068540.2.1 | Tomato | cytosol | 47.69 | 35.29 |
| KRH72344 | Soybean | cytosol | 48.21 | 35.14 |
| Os09t0128400-01 | Rice | nucleus | 18.72 | 33.03 |
| KRH44588 | Soybean | cytosol | 51.03 | 32.95 |
| CDY23256 | Canola | nucleus | 45.38 | 32.84 |
| KRH47309 | Soybean | nucleus | 49.74 | 32.39 |
| Bra010274.1-P | Field mustard | cytosol | 45.64 | 32.01 |
| CDY36470 | Canola | nucleus | 45.38 | 31.95 |
| CDX68693 | Canola | cytosol | 45.38 | 31.89 |
| Bra011221.1-P | Field mustard | nucleus | 45.64 | 31.28 |
| Bra024044.1-P | Field mustard | nucleus | 45.38 | 31.16 |
| CDY28214 | Canola | cytosol | 45.64 | 31.12 |
| CDY39241 | Canola | cytosol | 45.13 | 31.04 |
| AT4G30780.1 | Thale cress | nucleus | 46.67 | 30.9 |
| CDX72268 | Canola | nucleus | 44.36 | 30.57 |
| CDY28207 | Canola | cytosol | 3.08 | 7.06 |
| Bra011214.1-P | Field mustard | cytosol | 3.08 | 7.06 |
Protein Annotations
| EnsemblPlants:Os06t0186600-02 | EnsemblPlantsGene:Os06g0186600 | PANTHER:PTHR33494 | PANTHER:PTHR33494:SF1 | ProteinID:BAS96520.1 | UniParc:UPI000393C5C2 |
| UniProt:A0A0P0WTV8 | MapMan:35.2 | : | : | : | : |
Description
Conserved hypothetical protein. (Os06t0186600-01);Similar to predicted protein. (Os06t0186600-02)
Coordinates
chr6:-:4371000..4373696
Molecular Weight (calculated)
42378.8 Da
IEP (calculated)
4.513
GRAVY (calculated)
-0.428
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: YISRYEGDLV AKCYFAKHKL VWEVLEGGLK SKIEIQWSDI TALKASCPEN GQGTLDVVLA RPPLFFKETD PQPRKHTLWQ ATSDFTGGQA SMNRRHFLQC
101: PSSLLSKNFE KLLQCDQRLN QLSQQPDIIL DSPVFEPRCS IFEDPVESKC QGFTNLKDEH ELSGFSGSLS PCAGSSMSAK IEVNDSIATQ AGFLAQPGNP
201: GPSAVNVQGV SRNVNGAPEL NIPSWWSQLK VPGLRPSMSV DDLVNHLGNC ISEQITSVNP TLPSNEVPTK ETLEEIAQYL LGDAQGPPAS TSDERSLMAR
301: VDSLCCLIQK DTPPVAQPKP EPNDSDSIGG DGTEGSDEEF SSAASTVKTT GPAQPPAMSR KDSFGDLLMN LPRIASLPQF LFKIPEDSEN
101: PSSLLSKNFE KLLQCDQRLN QLSQQPDIIL DSPVFEPRCS IFEDPVESKC QGFTNLKDEH ELSGFSGSLS PCAGSSMSAK IEVNDSIATQ AGFLAQPGNP
201: GPSAVNVQGV SRNVNGAPEL NIPSWWSQLK VPGLRPSMSV DDLVNHLGNC ISEQITSVNP TLPSNEVPTK ETLEEIAQYL LGDAQGPPAS TSDERSLMAR
301: VDSLCCLIQK DTPPVAQPKP EPNDSDSIGG DGTEGSDEEF SSAASTVKTT GPAQPPAMSR KDSFGDLLMN LPRIASLPQF LFKIPEDSEN
001: MVEMMRSENH LRQASKHRNN NFPVKLEIIE DSLEEEHAPL NKRSKLWSNG TSVSKFSLLE EPSPLGLSLK KSPSFQELIE MKLSQSGDDS NSVKKESFGF
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
Arabidopsis Description
ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9ZUI1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.