Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra015971.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24100.1 | Bra015971.1-P | AT1G73720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34799 | Canola | nucleus | 99.07 | 99.07 |
| CDX76839 | Canola | nucleus | 93.94 | 94.16 |
| AT2G24100.1 | Thale cress | nucleus | 73.19 | 67.38 |
| HORVU0Hr1G040420.1 | Barley | cytosol | 21.91 | 54.97 |
| Bra024044.1-P | Field mustard | nucleus | 63.64 | 48.06 |
| Bra011221.1-P | Field mustard | nucleus | 63.17 | 47.63 |
| Bra010274.1-P | Field mustard | cytosol | 61.07 | 47.12 |
| KRH54987 | Soybean | nucleus | 57.11 | 45.97 |
| VIT_11s0037g00810.t01 | Wine grape | cytosol | 59.21 | 45.93 |
| Bra011214.1-P | Field mustard | cytosol | 18.18 | 45.88 |
| KRH63129 | Soybean | nucleus | 55.94 | 45.03 |
| Os02t0793800-00 | Rice | cytosol | 29.6 | 43.79 |
| GSMUA_Achr9P22760_001 | Banana | nucleus | 53.61 | 43.23 |
| Solyc07g005990.2.1 | Tomato | cytosol | 52.91 | 42.59 |
| PGSC0003DMT400029158 | Potato | cytosol | 52.45 | 42.21 |
| KRH03001 | Soybean | cytosol | 47.79 | 41.58 |
| GSMUA_Achr4P05930_001 | Banana | cytosol | 50.35 | 40.37 |
| GSMUA_Achr5P04640_001 | Banana | nucleus | 47.79 | 39.65 |
| HORVU3Hr1G034290.1 | Barley | cytosol | 43.59 | 39.45 |
| Os06t0186600-02 | Rice | cytosol | 35.66 | 39.23 |
| KRH72344 | Soybean | cytosol | 47.32 | 37.94 |
| GSMUA_Achr4P12730_001 | Banana | mitochondrion | 51.52 | 37.91 |
| KXG31260 | Sorghum | cytosol | 43.82 | 37.68 |
| HORVU7Hr1G031130.2 | Barley | nucleus | 46.39 | 37.62 |
| KXG19496 | Sorghum | nucleus | 46.85 | 37.5 |
| Zm00001d037085_P005 | Maize | nucleus | 46.62 | 37.11 |
| Zm00001d045084_P002 | Maize | cytosol | 46.39 | 36.99 |
| TraesCS7D01G153200.1 | Wheat | nucleus | 45.45 | 36.59 |
| TraesCS7A01G151300.1 | Wheat | nucleus | 45.45 | 36.59 |
| TraesCS7B01G055300.1 | Wheat | cytosol | 44.99 | 36.42 |
| Zm00001d052047_P001 | Maize | nucleus | 41.26 | 36.27 |
| GSMUA_Achr4P11470_001 | Banana | plasma membrane | 47.09 | 35.82 |
| KRH58482 | Soybean | mitochondrion | 32.4 | 34.84 |
| TraesCS6B01G387700.1 | Wheat | mitochondrion | 37.76 | 33.61 |
| Bra018890.1-P | Field mustard | nucleus | 19.11 | 33.33 |
| TraesCS6A01G354900.1 | Wheat | mitochondrion | 36.83 | 32.71 |
| TraesCS6D01G337100.2 | Wheat | mitochondrion | 36.6 | 31.15 |
| Bra001166.1-P | Field mustard | mitochondrion | 10.72 | 25.56 |
| Bra039411.1-P | Field mustard | plastid | 20.75 | 17.42 |
| Bra001165.1-P | Field mustard | mitochondrion | 8.39 | 15.65 |
Protein Annotations
Description
AT2G24100 (E=8e-166) | unknown protein
Coordinates
chrA09:-:31371043..31373143
Molecular Weight (calculated)
48145.8 Da
IEP (calculated)
5.649
GRAVY (calculated)
-0.551
Length
429 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSRNLRPAS KLPVKLEIVE DFLEEENGPA NKRSKLWSNG TSVSLIPPNL LDEPSPLGLS LRKSPSLQDL IQMRLSQSVK KETIANASSL VGTVEKLKAS
101: NFPATVLRIG QWEYKSRYEG DLVAKCYFAK HKLVWEVLEQ GLKSKIEIQW SDIMALKASC PEDEPGTLTI VLARRPLFYR ETNPQPRKHT LWQATSDFTD
201: GQASMNRQHF LQCPPGILNK HIEKLLQCDH RLFCLSREPE MNFDTLFSDT RQSIFEDPSV SGAQSSSEHM SLSHDALSPS SVMDARAIEG GVGARNWNQI
301: HQSISMNDFL AFLSDQANCE NNPEFEDMKQ LLLSDTQAET SDEKSVMSKV NSFYNLLETA ANDGKEIGLD NNNNSNKRHN KTEEGSIVLD HASSSMSRKD
401: SFSDLLAHLP RITSLPKFLF NISEEDGDA
101: NFPATVLRIG QWEYKSRYEG DLVAKCYFAK HKLVWEVLEQ GLKSKIEIQW SDIMALKASC PEDEPGTLTI VLARRPLFYR ETNPQPRKHT LWQATSDFTD
201: GQASMNRQHF LQCPPGILNK HIEKLLQCDH RLFCLSREPE MNFDTLFSDT RQSIFEDPSV SGAQSSSEHM SLSHDALSPS SVMDARAIEG GVGARNWNQI
301: HQSISMNDFL AFLSDQANCE NNPEFEDMKQ LLLSDTQAET SDEKSVMSKV NSFYNLLETA ANDGKEIGLD NNNNSNKRHN KTEEGSIVLD HASSSMSRKD
401: SFSDLLAHLP RITSLPKFLF NISEEDGDA
001: MVEMMRSENH LRQASKHRNN NFPVKLEIIE DSLEEEHAPL NKRSKLWSNG TSVSKFSLLE EPSPLGLSLK KSPSFQELIE MKLSQSGDDS NSVKKESFGF
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
Arabidopsis Description
ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9ZUI1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.