Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G151300.1 | Wheat | nucleus | 97.19 | 97.19 |
| HORVU7Hr1G031130.2 | Barley | nucleus | 94.18 | 94.9 |
| TraesCS7B01G055300.1 | Wheat | cytosol | 91.37 | 91.89 |
| HORVU3Hr1G034290.1 | Barley | cytosol | 80.68 | 90.72 |
| Os06t0186600-02 | Rice | cytosol | 56.1 | 76.67 |
| KXG19496 | Sorghum | nucleus | 73.55 | 73.13 |
| Zm00001d037085_P005 | Maize | nucleus | 71.48 | 70.69 |
| Zm00001d045084_P002 | Maize | cytosol | 71.11 | 70.45 |
| GSMUA_Achr5P04640_001 | Banana | nucleus | 51.22 | 52.8 |
| VIT_11s0037g00810.t01 | Wine grape | cytosol | 49.34 | 47.56 |
| AT2G24100.1 | Thale cress | nucleus | 40.53 | 46.35 |
| PGSC0003DMT400036859 | Potato | cytosol | 44.84 | 46.23 |
| Solyc03g117680.2.1 | Tomato | cytosol | 45.78 | 45.69 |
| CDX76839 | Canola | nucleus | 36.59 | 45.56 |
| CDY34799 | Canola | nucleus | 36.59 | 45.45 |
| Bra039229.1-P | Field mustard | nucleus | 36.59 | 45.45 |
| KRH63129 | Soybean | nucleus | 45.4 | 45.4 |
| PGSC0003DMT400074432 | Potato | nucleus | 43.15 | 45.36 |
| KRH03001 | Soybean | cytosol | 41.65 | 45.03 |
| Solyc07g005990.2.1 | Tomato | cytosol | 45.03 | 45.03 |
| PGSC0003DMT400029158 | Potato | cytosol | 44.84 | 44.84 |
| KRH54987 | Soybean | nucleus | 44.65 | 44.65 |
| VIT_09s0018g01680.t01 | Wine grape | cytosol | 43.53 | 43.69 |
| KRH72344 | Soybean | cytosol | 43.15 | 42.99 |
| Solyc06g068540.2.1 | Tomato | cytosol | 42.4 | 42.88 |
| KRH58482 | Soybean | mitochondrion | 31.14 | 41.6 |
| CDY23256 | Canola | nucleus | 41.84 | 41.37 |
| KRH44588 | Soybean | cytosol | 46.15 | 40.73 |
| KRH47309 | Soybean | nucleus | 45.59 | 40.57 |
| TraesCS5D01G168600.1 | Wheat | nucleus | 40.34 | 40.49 |
| CDY36470 | Canola | nucleus | 42.03 | 40.43 |
| CDX68693 | Canola | cytosol | 42.03 | 40.36 |
| Bra010274.1-P | Field mustard | cytosol | 41.84 | 40.11 |
| Bra024044.1-P | Field mustard | nucleus | 42.21 | 39.61 |
| Bra011221.1-P | Field mustard | nucleus | 42.21 | 39.54 |
| CDY28214 | Canola | cytosol | 42.4 | 39.51 |
| CDY39241 | Canola | cytosol | 41.84 | 39.33 |
| TraesCS6D01G337100.2 | Wheat | mitochondrion | 36.77 | 38.89 |
| CDY28207 | Canola | cytosol | 12.38 | 38.82 |
| Bra011214.1-P | Field mustard | cytosol | 12.38 | 38.82 |
| CDX72268 | Canola | nucleus | 41.09 | 38.69 |
| AT4G30780.1 | Thale cress | nucleus | 42.59 | 38.54 |
| KRH28821 | Soybean | peroxisome | 28.71 | 35.83 |
| TraesCS5D01G505800.1 | Wheat | cytosol | 23.45 | 29.21 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G153200.1 | EnsemblPlantsGene:TraesCS7D01G153200 | PANTHER:PTHR33494 | PANTHER:PTHR33494:SF1 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr7D:-:101580722..101585530
Molecular Weight (calculated)
58377.8 Da
IEP (calculated)
5.262
GRAVY (calculated)
-0.593
Length
533 amino acids
Sequence
(BLAST)
(BLAST)
001: MVQLPAMGKR QHPEPAEPPM APPAAAVKME ADELRDFDHG PLGKRARPGQ PSPPPLTPPH QDMYHNVLDE PSPLGLRLKK SPSLLDLIQM RLSQANSDAG
101: QSTTDNAEPS KKKDLKSGTS SASERLKASN FPASVLKIGT WKYTSKYEGD LVAKCYFAKH KLVWEVLEGG LKSKIEIQWS DITALKVTLP EVGDGSLDVM
201: LARPPLFFKE TDPQPRKHTL WQATSDFTRG QASMNRHHFL QCPTTSLGKN FEKLVQCDQR LHQLSQQTDV ILDSSVFEPR CSIFEDPVEL KCHDFANLKD
301: EREDLPGFSG SVSPCAGSSM STRNDTNDCF GKQPEFVAQP MHPGASAVNA QPVSRNVNGV AQEFNIPNWW SQLKVPGLRP SMSVDDLVSH LGNCISEQIT
401: SGNPSMANNE VPTKESLEEI AQYLLGDAQG PQAPASDERL MARVDSLCCL LQKDTAPVSQ PKPEPNDSGS IGGVDSEGSD DEFSSASTRK TADANQQPPA
501: MSRKDSFGDL LMNLPRIASI PQFLFKIPED SEN
101: QSTTDNAEPS KKKDLKSGTS SASERLKASN FPASVLKIGT WKYTSKYEGD LVAKCYFAKH KLVWEVLEGG LKSKIEIQWS DITALKVTLP EVGDGSLDVM
201: LARPPLFFKE TDPQPRKHTL WQATSDFTRG QASMNRHHFL QCPTTSLGKN FEKLVQCDQR LHQLSQQTDV ILDSSVFEPR CSIFEDPVEL KCHDFANLKD
301: EREDLPGFSG SVSPCAGSSM STRNDTNDCF GKQPEFVAQP MHPGASAVNA QPVSRNVNGV AQEFNIPNWW SQLKVPGLRP SMSVDDLVSH LGNCISEQIT
401: SGNPSMANNE VPTKESLEEI AQYLLGDAQG PQAPASDERL MARVDSLCCL LQKDTAPVSQ PKPEPNDSGS IGGVDSEGSD DEFSSASTRK TADANQQPPA
501: MSRKDSFGDL LMNLPRIASI PQFLFKIPED SEN
001: MVEMMRSENH LRQASKHRNN NFPVKLEIIE DSLEEEHAPL NKRSKLWSNG TSVSKFSLLE EPSPLGLSLK KSPSFQELIE MKLSQSGDDS NSVKKESFGF
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
Arabidopsis Description
ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9ZUI1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.