CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70999
CDX88799
CDY09133

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30780.1	CDX70999	AT5G22360.1	21798944
AT4G30780.1	CDX88799	AT5G22360.1	21798944
AT4G30780.1	CDY09133	AT5G22360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28214	Canola	cytosol	94.77	91.96
CDY39241	Canola	cytosol	81.08	79.37
CDX72268	Canola	nucleus	79.1	77.56
AT4G30780.1	Thale cress	nucleus	81.8	77.08
CDY23256	Canola	nucleus	74.41	76.62
CDY36470	Canola	nucleus	74.41	74.55
CDY28207	Canola	cytosol	20.18	65.88
CDY34799	Canola	nucleus	48.11	62.24
CDX76839	Canola	nucleus	47.21	61.22
HORVU0Hr1G040420.1	Barley	cytosol	17.66	57.31
KRH63129	Soybean	nucleus	47.39	49.34
VIT_11s0037g00810.t01	Wine grape	cytosol	49.01	49.19
KRH54987	Soybean	nucleus	46.85	48.78
Os06t0186600-02	Rice	cytosol	31.89	45.38
KRH03001	Soybean	cytosol	40.0	45.03
HORVU3Hr1G034290.1	Barley	cytosol	38.38	44.94
Solyc07g005990.2.1	Tomato	cytosol	43.06	44.84
Os02t0793800-00	Rice	cytosol	23.42	44.83
PGSC0003DMT400029158	Potato	cytosol	42.52	44.28
KRH72344	Soybean	cytosol	42.34	43.93
GSMUA_Achr9P22760_001	Banana	nucleus	41.44	43.23
TraesCS7B01G055300.1	Wheat	cytosol	40.9	42.83
KXG19496	Sorghum	nucleus	41.26	42.72
HORVU7Hr1G031130.2	Barley	nucleus	40.72	42.72
TraesCS7A01G151300.1	Wheat	nucleus	40.9	42.59
GSMUA_Achr5P04640_001	Banana	nucleus	39.64	42.55
Zm00001d037085_P005	Maize	nucleus	41.26	42.49
Zm00001d045084_P002	Maize	cytosol	40.9	42.19
TraesCS7D01G153200.1	Wheat	nucleus	40.36	42.03
GSMUA_Achr4P05930_001	Banana	cytosol	40.36	41.87
GSMUA_Achr4P12730_001	Banana	mitochondrion	41.44	39.45
KXG31260	Sorghum	cytosol	35.32	39.28
KRH58482	Soybean	mitochondrion	28.11	39.1
Zm00001d052047_P001	Maize	nucleus	32.97	37.5
GSMUA_Achr4P11470_001	Banana	plasma membrane	37.84	37.23
TraesCS6B01G387700.1	Wheat	mitochondrion	30.09	34.65
CDY22822	Canola	nucleus	15.32	34.55
TraesCS6A01G354900.1	Wheat	mitochondrion	29.01	33.33
CDY25203	Canola	cytosol	14.23	32.78
TraesCS6D01G337100.2	Wheat	mitochondrion	29.01	31.94
CDY14664	Canola	cytosol	17.12	23.4
CDY05199	Canola	nucleus	16.4	22.69
CDX74132	Canola	cytosol	15.5	21.45
CDY27740	Canola	plastid	16.4	17.84

Protein Annotations

EnsemblPlants:CDX68693	EnsemblPlantsGene:GSBRNA2T00130371001	PANTHER:PTHR33494	PANTHER:PTHR33494:SF1	ProteinID:CDX68693	ProteinID:CDX68693.1
SEG:seg	UniParc:UPI0004EE5C56	MapMan:35.2	:	:	:

Description

BnaC01g07600D

Coordinates

chrLK031789:+:768993..771655

Molecular Weight (calculated)

60772.5 Da

IEP (calculated)

5.744

GRAVY (calculated)

-0.489

Length

555 amino acids

Sequence
(BLAST)

001: MVEMRKSGVM RTESELASKC RDDLPVKLEI AEDDLEEAHG PLNKRSKLWS SGTSSSSMAP AKYNPLDEPS PLGLSLRKSP SLLDLIQMRL TQKAADAVGS
101: APGSIEKLKA SNFPATVLKI GKWEYKSRYE GDLVAKCYFA KHKLVWEVLE QGLKSKIEIQ WSDIVGLQAK CPEDGPGTLT LLLSRQPLFF RETNPQPRKH
201: TLWQATSDFT DGQASMYRLH FLQCAQGIMN KHFEKLVQCD HRLFHLSRET EIKMDSPCFD ARPSIFEDPS ESKGYPFGNL NLSTGPSISG THNLASPAGA
301: QSSSEHMYLS HEAPSPSSVI DARGNEGTGG VETVNSRNTT DCGQMGAPGL RQSMSLSDFL AVLCDSDNTT HPNQVENAAG VHPSMSVSDL VAFLSTDSSQ
401: LKVPGLQQSI SVSDFVGLLS DSAGGNHPEH LEKFESLKQQ LLSDNIQFDT PDEKSLMPRV NSLFNLLYKD PNVAANSQLN TETSVGLKSE LNDLNGTVSA
501: NNNNNNRVLD PASSSKPQGM LRKDSFSDLL LHLPRITSLP KFLSNISEED GDAYK

Best Arabidopsis Sequence Match ( AT4G30780.1 )
(BLAST)

001: MVEMRKSGGL RPESESAARC RDELPVKLEI AEDDLEEEHG PLNKRSRLWS PGTSSSTMAP AKYNPLDEPS PLGLSLKKSP SLLELIQMKI THCGDPKAAE
101: TLKAGALGSG LKRESKTIAA AASVGPTLAP GSIEKLKASN FPASLLKIGQ WEYKSRYEGD LVAKCYFAKH KLVWEVLEQG LKSKIEIQWS DIMALKANCP
201: EDGPGTLTLV LARQPLFFRE TNPQPRKHTL WQATSDFTDG QASMNRQHFL QCAQGIMNKH FEKLVQCDHR LFHLSRQPEI AIDSPYFDAR QSIFEDPSES
301: KGHPFGNLNL STGPSISGTQ NLASPVGAQS SSEHMYLSHE APSPSSVIDA RANEGIGGSE AVNSRNRTDC GQIEAPGIHQ SMSLSDFLAV LCDTKNTTDL
401: NLADDVDGLH QSMSVSDFVA YLSDSRNITD SDQIKVPGLH QSMSVSDFVG LLSDSAGGSH PEHMEKFEIM KQQLLSDNIQ FEAPDEKSLM PRVNSLFNLL
501: YKDPNVAANS QLNTEMSVGL KSEPKGIVSD NNNNNNNNNR VLDTASSSKP QGMLRKDSFS DLLLHLPRIT SLPKFLSNIS EEDGDAYNR

Arabidopsis Description

ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9SUG8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.