CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001165.1-P	Field mustard	mitochondrion	46.06	81.3
Bra001166.1-P	Field mustard	mitochondrion	33.5	75.56
CDX74132	Canola	cytosol	54.19	54.86
CDY22822	Canola	nucleus	28.33	46.75
CDY25203	Canola	cytosol	26.6	44.81
CDY05199	Canola	nucleus	38.67	39.15
AT1G54300.1	Thale cress	cytosol, nucleus, vacuole	25.37	32.8
AT3G05770.1	Thale cress	nucleus	31.03	30.73
KRG90540	Soybean	nucleus	18.97	27.6
CDY27740	Canola	plastid	34.48	27.45
KRH33824	Soybean	nucleus	18.97	27.11
KRH30889	Soybean	cytosol	14.78	24.39
CDY34799	Canola	nucleus	23.4	22.14
GSMUA_Achr11P...	Banana	cytosol	17.98	21.6
CDX76839	Canola	nucleus	22.66	21.5
CDY28207	Canola	cytosol	7.39	17.65
CDX72268	Canola	nucleus	24.38	17.49
CDY23256	Canola	nucleus	23.15	17.44
CDX68693	Canola	cytosol	23.4	17.12
CDY39241	Canola	cytosol	23.89	17.11
CDY36470	Canola	nucleus	23.15	16.97
Solyc01g100440.1.1	Tomato	nucleus	21.67	16.92
CDY28214	Canola	cytosol	23.4	16.61
VIT_14s0060g01240.t01	Wine grape	cytosol	22.66	14.77
PGSC0003DMT400007166	Potato	nucleus	21.18	14.55

Protein Annotations

EnsemblPlants:CDY14664	EnsemblPlantsGene:GSBRNA2T00084444001	PANTHER:PTHR33494	PANTHER:PTHR33494:SF5	ProteinID:CDY14664	ProteinID:CDY14664.1
SEG:seg	UniParc:UPI0004EC30B5	UniProt:A0A078FP39	MapMan:35.2	:	:

Description

BnaC05g19210DBnaC05g19210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FP39]

Coordinates

chrLK032046:-:48709..50935

Molecular Weight (calculated)

46335.2 Da

IEP (calculated)

5.109

GRAVY (calculated)

-0.608

Length

406 amino acids

Sequence
(BLAST)

001: MDTREEESQV DEGLFPPLNL LFTPTPELIA LIETQLQQDY SSPHQQNFHY TTEHPKTLTP SETPKNHEKL KAVDSQIYKI TIGQWTHMRV YPDDIKAKFY
101: LAKKRIIWEI LDDVETGTQV ERLKRKIESQ WSDALSFRAT YNSNDGAGIL EVELGKRPTF FIETNPQRGK HTLWKICPDF TLNQSASIYR RHTLHFFPGD
201: LQKTLDKLVS GDSFWSKLAK VSFPTLQSLY FDFGFGDSND GFGDSNNNAA ITLSHYGHYQ TVPVFGQVPK PDVNVNLNVP TQFCGTDGRQ MNSFVQDVDF
301: PGTQVIQPSY QLIGGRYFSG QQFNNPMIQD QTGNTVELRG NQAYEQALRE TQASYMMFQM EPYLQDSLAQ GGDTQNMEHI TSDGNFQTNS ICYCDQCLIN
401: NGLMPH

Best Arabidopsis Sequence Match ( AT3G05770.2 )
(BLAST)

001: MSMKRSREES QGGGNHNRFV DEGPRLNLPL TKTPELINKI ESYLKVHYTC PHQQTENSSK TSTLPKSPEK LKAMNFPIST IKIGDCVFVA KNPDDIVAKF
101: YFAKKKLLWE FLFGEPVANM PRLKSKIEIQ WNDVSSFEES INSRDETGIL KIELKKRPTF FTETNPQAGK HTQWKQLDYD FTGDQASYYR RHTLHFPPGV
201: LQKNLEKLLT DSFWSKLYKV PFPVHESLYF DIGFENNNSS NGHSKTVGFN VNNGLQHDFS QGIGGVGEGE GNFSMANGGW QRNSYSHVNS LNYNTDNGLL
301: GMQAIPPSSQ VANEHYNNTQ NDYTGSQFGY RMNQDEIQKM QRIGKILESQ AYAVPDTQTK LTSSGMNNGP MYPPAGSYLE SRLLEEWYEH TRRFQQ

Arabidopsis Description

F10A16.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9L9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.