CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018890.1-P	Field mustard	nucleus	100.0	100.0
CDY25203	Canola	cytosol	74.39	75.93
AT1G54300.1	Thale cress	cytosol, nucleus, vacuole	37.8	29.62
CDY14664	Canola	cytosol	46.75	28.33
CDX74132	Canola	cytosol	45.94	28.18
CDY05199	Canola	nucleus	43.5	26.68
AT3G05770.1	Thale cress	nucleus	43.09	25.85
KRG90540	Soybean	nucleus	26.83	23.66
KRH33824	Soybean	nucleus	26.02	22.54
CDY27740	Canola	plastid	44.31	21.37
KRH30889	Soybean	cytosol	21.14	21.14
CDX76839	Canola	nucleus	33.33	19.16
CDY34799	Canola	nucleus	33.33	19.11
CDY28207	Canola	cytosol	12.2	17.65
GSMUA_Achr11P...	Banana	cytosol	21.95	15.98
CDX72268	Canola	nucleus	35.77	15.55
CDY39241	Canola	cytosol	35.37	15.34
CDX68693	Canola	cytosol	34.55	15.32
CDY28214	Canola	cytosol	34.96	15.04
CDY23256	Canola	nucleus	32.93	15.03
Solyc01g100440.1.1	Tomato	nucleus	31.71	15.0
CDY36470	Canola	nucleus	32.52	14.44
PGSC0003DMT400007166	Potato	nucleus	32.11	13.37
VIT_14s0060g01240.t01	Wine grape	cytosol	29.67	11.72

Protein Annotations

EnsemblPlants:CDY22822	EnsemblPlantsGene:GSBRNA2T00021169001	PANTHER:PTHR33494	PANTHER:PTHR33494:SF5	ProteinID:CDY22822	ProteinID:CDY22822.1
SEG:seg	UniParc:UPI000253EA05	UniProt:A0A078GCN7	MapMan:35.2	:	:

Description

BnaA06g02550DBnaA06g02550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GCN7]

Coordinates

chrLK032136:+:345731..346972

Molecular Weight (calculated)

28475.7 Da

IEP (calculated)

6.804

GRAVY (calculated)

-0.757

Length

246 amino acids

Sequence
(BLAST)

001: MERSQEELES SNNGGSSPNK IPGSVDEEVE NGPLNLALTI TPEFLKQIES LLQQQEQDSN STPPGKTKPM SFPISKITIG EWTLDAVYEQ DLKAKIYFAR
101: KKIMWECVED VSTTTGMNRK IEMQWGDVLS LKPWYHPHDQ TGILKVELRK PPTFFIETNP QARKHTQWQQ LYQDFTRNHS ASRNRIHTLH FAPGVLQKNM
201: EKLVSGDRFW SELVKVHFPT LEHLYFYDIG YGNSMNNMHD GNRVPR

Best Arabidopsis Sequence Match ( AT3G05770.1 )
(BLAST)

001: MSMKRSREES QGGGNHNRFV DEGPRLNLPL TKTPELINKI ESYLKVHYTC PHQQTENSSK TSTLPKSPEK LKAMNFPIST IKIGDCVFVA KNPDDIVAKF
101: YFAKKKLLWE FLFGEPVANM PRLKSKIEIQ WNDVSSFEES INSRDETGIL KIELKKRPTF FTETNPQAGK HTQWKQLDYD FTGDQASYYR RHTLHFPPGV
201: LQKNLEKLLT DSFWSKLYKV PFPVHESLYF DIGFENNNSS NGHSKTVGFN VNNGLQHDFS QVRDLKERKK IITLIGIGGV GEGEGNFSMA NGGWQRNSYS
301: HVNSLNYNTD NGLLGMQAIP PSSQVANEHY NNTQNDYTGS QFGYRMNQDE IQKMQRIGKI LESQAYAVPD TQTKLTSSGM NNGPMYPPAG SYLESRLLEE
401: WYEHTRRFQQ

Arabidopsis Description

F10A16.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9L9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.