CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70999
CDX88799
CDY09133

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30780.1	CDX70999	AT5G22360.1	21798944
AT4G30780.1	CDX88799	AT5G22360.1	21798944
AT4G30780.1	CDY09133	AT5G22360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011221.1-P	Field mustard	nucleus	97.55	98.07
CDX68693	Canola	cytosol	91.96	94.77
CDY39241	Canola	cytosol	82.69	83.42
CDX72268	Canola	nucleus	79.37	80.21
AT4G30780.1	Thale cress	nucleus	80.59	78.27
CDY23256	Canola	nucleus	73.25	77.74
CDY28207	Canola	cytosol	23.08	77.65
CDY36470	Canola	nucleus	75.17	77.62
CDY34799	Canola	nucleus	47.2	62.94
CDX76839	Canola	nucleus	45.8	61.22
HORVU0Hr1G040420.1	Barley	cytosol	17.31	57.89
KRH63129	Soybean	nucleus	47.03	50.47
KRH54987	Soybean	nucleus	46.33	49.72
VIT_11s0037g00810.t01	Wine grape	cytosol	47.38	49.01
KRH03001	Soybean	cytosol	39.86	46.25
Os06t0186600-02	Rice	cytosol	31.12	45.64
HORVU3Hr1G034290.1	Barley	cytosol	37.59	45.36
Solyc07g005990.2.1	Tomato	cytosol	41.78	44.84
KRH72344	Soybean	cytosol	41.78	44.67
Os02t0793800-00	Rice	cytosol	22.55	44.48
PGSC0003DMT400029158	Potato	cytosol	41.26	44.28
KXG19496	Sorghum	nucleus	40.56	43.28
GSMUA_Achr9P22760_001	Banana	nucleus	40.21	43.23
GSMUA_Achr5P04640_001	Banana	nucleus	38.99	43.13
HORVU7Hr1G031130.2	Barley	nucleus	39.86	43.1
Zm00001d037085_P005	Maize	nucleus	40.56	43.04
TraesCS7B01G055300.1	Wheat	cytosol	39.86	43.02
TraesCS7A01G151300.1	Wheat	nucleus	40.03	42.96
TraesCS7D01G153200.1	Wheat	nucleus	39.51	42.4
Zm00001d045084_P002	Maize	cytosol	39.86	42.38
GSMUA_Achr4P05930_001	Banana	cytosol	39.51	42.24
KXG31260	Sorghum	cytosol	34.62	39.68
GSMUA_Achr4P12730_001	Banana	mitochondrion	40.03	39.28
KRH58482	Soybean	mitochondrion	27.27	39.1
GSMUA_Achr4P11470_001	Banana	plasma membrane	37.24	37.77
Zm00001d052047_P001	Maize	nucleus	32.17	37.7
CDY22822	Canola	nucleus	15.04	34.96
TraesCS6B01G387700.1	Wheat	mitochondrion	29.02	34.44
TraesCS6A01G354900.1	Wheat	mitochondrion	28.67	33.95
CDY25203	Canola	cytosol	13.99	33.2
TraesCS6D01G337100.2	Wheat	mitochondrion	28.15	31.94
CDY14664	Canola	cytosol	16.61	23.4
CDY05199	Canola	nucleus	15.56	22.19
CDX74132	Canola	cytosol	14.86	21.2
CDY27740	Canola	plastid	15.73	17.65

Protein Annotations

EnsemblPlants:CDY28214	EnsemblPlantsGene:GSBRNA2T00039940001	PANTHER:PTHR33494	PANTHER:PTHR33494:SF1	ProteinID:CDY28214	ProteinID:CDY28214.1
SEG:seg	UniParc:UPI0004EEEA2A	UniProt:A0A078GSN4	MapMan:35.2	:	:

Description

BnaA01g06350DBnaA01g06350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GSN4]

Coordinates

chrLK032216:+:315807..318315

Molecular Weight (calculated)

62335.5 Da

IEP (calculated)

6.010

GRAVY (calculated)

-0.463

Length

572 amino acids

Sequence
(BLAST)

001: MVEMRKSGVT KPDSELASKC RDELPVKLEI AEDDLEEAHG PLNKRSKLWS SGTSSSSMAP AKYNPLDEPS PLGLSLRKSP SLLDLIQMRL TQKAADAVGS
101: GVKKESKCIT AASAGATLAS GSIEKLKASN FPATVLKIGK WEYKSRYEGD LVAKCYFAKH KLVWEVLEQG LKSKIEIQWS DIVGLQAKCP EDGPGTLTLL
201: LSRQPLFFRE TNPQPRKHTL WQATSDFTDG QASMYRLHFL QCAQGIMNKH FEKLVQCDHR LFHLSREPEI KMDSPCFDAR PSIFEDPSES KGYPYGNLNL
301: STGPSISGTH NLASPVGAQS SSEHMYLSHE APSPSSVIDA RGNEGTGGVE TVNSRNTTDC GQMGAPGLRQ SMSLNDFLAV LCDSDNTTHP NQVENAAGVH
401: PSMSVSDLVA FLSTDSSQLK VPGLQQSISV SDFVGLLSDS AGGNHPEHLE KFESLKQQLL SDNIQFDTPD EKSLMPRVNS LFNLLYKDPN VAANSQLNTE
501: IPVGLKSELN DLNGTVSANN NNRVLDPASS SKPQGGMLRK DSFSDLLLHL PRITSLPKFL SNISEEDGDA YK

Best Arabidopsis Sequence Match ( AT4G30780.1 )
(BLAST)

001: MVEMRKSGGL RPESESAARC RDELPVKLEI AEDDLEEEHG PLNKRSRLWS PGTSSSTMAP AKYNPLDEPS PLGLSLKKSP SLLELIQMKI THCGDPKAAE
101: TLKAGALGSG LKRESKTIAA AASVGPTLAP GSIEKLKASN FPASLLKIGQ WEYKSRYEGD LVAKCYFAKH KLVWEVLEQG LKSKIEIQWS DIMALKANCP
201: EDGPGTLTLV LARQPLFFRE TNPQPRKHTL WQATSDFTDG QASMNRQHFL QCAQGIMNKH FEKLVQCDHR LFHLSRQPEI AIDSPYFDAR QSIFEDPSES
301: KGHPFGNLNL STGPSISGTQ NLASPVGAQS SSEHMYLSHE APSPSSVIDA RANEGIGGSE AVNSRNRTDC GQIEAPGIHQ SMSLSDFLAV LCDTKNTTDL
401: NLADDVDGLH QSMSVSDFVA YLSDSRNITD SDQIKVPGLH QSMSVSDFVG LLSDSAGGSH PEHMEKFEIM KQQLLSDNIQ FEAPDEKSLM PRVNSLFNLL
501: YKDPNVAANS QLNTEMSVGL KSEPKGIVSD NNNNNNNNNR VLDTASSSKP QGMLRKDSFS DLLLHLPRIT SLPKFLSNIS EEDGDAYNR

Arabidopsis Description

ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9SUG8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.