Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27740 | Canola | plastid | 72.82 | 57.25 |
| CDY25203 | Canola | cytosol | 26.68 | 44.4 |
| CDY22822 | Canola | nucleus | 26.68 | 43.5 |
| CDY14664 | Canola | cytosol | 39.15 | 38.67 |
| CDX74132 | Canola | cytosol | 35.16 | 35.16 |
| AT1G54300.1 | Thale cress | cytosol, nucleus, vacuole | 25.94 | 33.12 |
| AT3G05770.1 | Thale cress | nucleus | 31.67 | 30.98 |
| KRG90540 | Soybean | nucleus | 19.95 | 28.67 |
| KRH33824 | Soybean | nucleus | 18.95 | 26.76 |
| KRH30889 | Soybean | cytosol | 15.21 | 24.8 |
| CDX76839 | Canola | nucleus | 21.2 | 19.86 |
| CDY34799 | Canola | nucleus | 21.2 | 19.81 |
| Solyc01g100440.1.1 | Tomato | nucleus | 24.69 | 19.04 |
| PGSC0003DMT400007166 | Potato | nucleus | 25.19 | 17.09 |
| GSMUA_Achr11P... | Banana | cytosol | 14.21 | 16.86 |
| CDY36470 | Canola | nucleus | 22.94 | 16.61 |
| CDX68693 | Canola | cytosol | 22.69 | 16.4 |
| CDY23256 | Canola | nucleus | 21.95 | 16.33 |
| CDX72268 | Canola | nucleus | 22.94 | 16.25 |
| CDY28207 | Canola | cytosol | 6.73 | 15.88 |
| CDY39241 | Canola | cytosol | 22.19 | 15.7 |
| CDY28214 | Canola | cytosol | 22.19 | 15.56 |
| VIT_14s0060g01240.t01 | Wine grape | cytosol | 23.44 | 15.09 |
Protein Annotations
| EnsemblPlants:CDY05199 | EnsemblPlantsGene:GSBRNA2T00120005001 | PANTHER:PTHR33494 | PANTHER:PTHR33494:SF5 | ProteinID:CDY05199 | ProteinID:CDY05199.1 |
| SEG:seg | UniParc:UPI0004EE0B37 | MapMan:35.2 | : | : | : |
Description
BnaC05g46040D
Coordinates
chrLK031960:-:326549..328686
Molecular Weight (calculated)
45971.9 Da
IEP (calculated)
6.344
GRAVY (calculated)
-0.802
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MANNLPDEFH GATPIWFGGL GGEDTLVQEG LYPPLNLTYT PTQEHFNKIE SKFQEERQKQ HYSTENTKTL TTHETPTTTE KLKAMNFEIS KIIIGEWTHK
101: SVYPDDLKAK FYFAKRRLMW EILDEDSKLK RKIEMQWSDV LSFRASYPPQ NETGTLEVEL GKCPTFFLEA NPQRGKHTQW KQLDQDFTPG QSASKYRRHT
201: LHISPGDLKM NLEKLVSAVS FWSKLAKVNF PTLPQSLYFG NGNSNNNDNS NLCPYGNSRT LGINGNHHYP QGLGHVPVEN VNFNMATEFC PNNQMNPIFQ
301: DDHQDETMSQ LPGMQVTHPS SQHINMGRYI ISESPFNNPM IPDDRHTSNT GELRGPYLQD ILAQEEVIQN MKCIRRQFQT NGECYCNQCF NNINGSLPPD
401: S
101: SVYPDDLKAK FYFAKRRLMW EILDEDSKLK RKIEMQWSDV LSFRASYPPQ NETGTLEVEL GKCPTFFLEA NPQRGKHTQW KQLDQDFTPG QSASKYRRHT
201: LHISPGDLKM NLEKLVSAVS FWSKLAKVNF PTLPQSLYFG NGNSNNNDNS NLCPYGNSRT LGINGNHHYP QGLGHVPVEN VNFNMATEFC PNNQMNPIFQ
301: DDHQDETMSQ LPGMQVTHPS SQHINMGRYI ISESPFNNPM IPDDRHTSNT GELRGPYLQD ILAQEEVIQN MKCIRRQFQT NGECYCNQCF NNINGSLPPD
401: S
001: MSMKRSREES QGGGNHNRFV DEGPRLNLPL TKTPELINKI ESYLKVHYTC PHQQTENSSK TSTLPKSPEK LKAMNFPIST IKIGDCVFVA KNPDDIVAKF
101: YFAKKKLLWE FLFGEPVANM PRLKSKIEIQ WNDVSSFEES INSRDETGIL KIELKKRPTF FTETNPQAGK HTQWKQLDYD FTGDQASYYR RHTLHFPPGV
201: LQKNLEKLLT DSFWSKLYKV PFPVHESLYF DIGFENNNSS NGHSKTVGFN VNNGLQHDFS QGIGGVGEGE GNFSMANGGW QRNSYSHVNS LNYNTDNGLL
301: GMQAIPPSSQ VANEHYNNTQ NDYTGSQFGY RMNQDEIQKM QRIGKILESQ AYAVPDTQTK LTSSGMNNGP MYPPAGSYLE SRLLEEWYEH TRRFQQ
101: YFAKKKLLWE FLFGEPVANM PRLKSKIEIQ WNDVSSFEES INSRDETGIL KIELKKRPTF FTETNPQAGK HTQWKQLDYD FTGDQASYYR RHTLHFPPGV
201: LQKNLEKLLT DSFWSKLYKV PFPVHESLYF DIGFENNNSS NGHSKTVGFN VNNGLQHDFS QGIGGVGEGE GNFSMANGGW QRNSYSHVNS LNYNTDNGLL
301: GMQAIPPSSQ VANEHYNNTQ NDYTGSQFGY RMNQDEIQKM QRIGKILESQ AYAVPDTQTK LTSSGMNNGP MYPPAGSYLE SRLLEEWYEH TRRFQQ
Arabidopsis Description
F10A16.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9L9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.