Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24100.1 | CDX73008 | AT1G73720.1 | 21798944 |
| AT2G24100.1 | CDY60136 | AT1G73720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039229.1-P | Field mustard | nucleus | 94.16 | 93.94 |
| CDY34799 | Canola | nucleus | 93.22 | 93.01 |
| AT2G24100.1 | Thale cress | nucleus | 72.2 | 66.31 |
| HORVU0Hr1G040420.1 | Barley | cytosol | 21.96 | 54.97 |
| CDX68693 | Canola | cytosol | 61.22 | 47.21 |
| CDY23256 | Canola | nucleus | 59.11 | 46.94 |
| CDY39241 | Canola | cytosol | 61.22 | 46.21 |
| KRH54987 | Soybean | nucleus | 57.24 | 45.97 |
| CDY28214 | Canola | cytosol | 61.22 | 45.8 |
| VIT_11s0037g00810.t01 | Wine grape | cytosol | 59.11 | 45.75 |
| CDY36470 | Canola | nucleus | 58.88 | 45.49 |
| CDX72268 | Canola | nucleus | 60.05 | 45.41 |
| KRH63129 | Soybean | nucleus | 56.07 | 45.03 |
| Os02t0793800-00 | Rice | cytosol | 29.91 | 44.14 |
| CDY28207 | Canola | cytosol | 17.52 | 44.12 |
| GSMUA_Achr9P22760_001 | Banana | nucleus | 53.5 | 43.05 |
| Solyc07g005990.2.1 | Tomato | cytosol | 52.8 | 42.4 |
| PGSC0003DMT400029158 | Potato | cytosol | 52.1 | 41.84 |
| KRH03001 | Soybean | cytosol | 48.13 | 41.78 |
| GSMUA_Achr4P05930_001 | Banana | cytosol | 50.7 | 40.56 |
| GSMUA_Achr5P04640_001 | Banana | nucleus | 48.36 | 40.04 |
| Os06t0186600-02 | Rice | cytosol | 35.98 | 39.49 |
| HORVU3Hr1G034290.1 | Barley | cytosol | 43.69 | 39.45 |
| KRH72344 | Soybean | cytosol | 47.66 | 38.13 |
| HORVU7Hr1G031130.2 | Barley | nucleus | 46.5 | 37.62 |
| GSMUA_Achr4P12730_001 | Banana | mitochondrion | 51.17 | 37.56 |
| KXG19496 | Sorghum | nucleus | 46.73 | 37.31 |
| KXG31260 | Sorghum | cytosol | 43.46 | 37.27 |
| Zm00001d037085_P005 | Maize | nucleus | 46.73 | 37.11 |
| Zm00001d045084_P002 | Maize | cytosol | 46.5 | 36.99 |
| TraesCS7D01G153200.1 | Wheat | nucleus | 45.56 | 36.59 |
| TraesCS7A01G151300.1 | Wheat | nucleus | 45.56 | 36.59 |
| TraesCS7B01G055300.1 | Wheat | cytosol | 44.86 | 36.23 |
| Zm00001d052047_P001 | Maize | nucleus | 40.89 | 35.86 |
| GSMUA_Achr4P11470_001 | Banana | plasma membrane | 47.2 | 35.82 |
| KRH58482 | Soybean | mitochondrion | 32.71 | 35.09 |
| CDY22822 | Canola | nucleus | 19.16 | 33.33 |
| TraesCS6B01G387700.1 | Wheat | mitochondrion | 37.38 | 33.2 |
| CDY25203 | Canola | cytosol | 18.22 | 32.37 |
| TraesCS6A01G354900.1 | Wheat | mitochondrion | 36.45 | 32.3 |
| TraesCS6D01G337100.2 | Wheat | mitochondrion | 36.22 | 30.75 |
| CDY14664 | Canola | cytosol | 21.5 | 22.66 |
| CDX74132 | Canola | cytosol | 20.09 | 21.45 |
| CDY05199 | Canola | nucleus | 19.86 | 21.2 |
| CDY27740 | Canola | plastid | 19.63 | 16.47 |
Protein Annotations
| EnsemblPlants:CDX76839 | EnsemblPlantsGene:GSBRNA2T00127346001 | PANTHER:PTHR33494 | PANTHER:PTHR33494:SF1 | ProteinID:CDX76839 | ProteinID:CDX76839.1 |
| SEG:seg | UniParc:UPI0004EF27DF | MapMan:35.2 | : | : | : |
Description
BnaC08g34250D
Coordinates
chrLK031808:-:1362298..1364742
Molecular Weight (calculated)
48002.7 Da
IEP (calculated)
5.493
GRAVY (calculated)
-0.508
Length
428 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSSNLRPAS KLPVKLEIVE DFLEEENGPA NKRSKVWSNG TSVSLIPPNL LDEPSPLGLS LRKSPSLQDL IQMRLSQSVK KETIANASSL VGTVEKLKAS
101: NFPATLLRIG QWEYKSRYEG DLVAKCYFAK HKLVWEVLEQ GLKSKIEIQW SDIMALKASC PEDEPGTLTI VLARRPLFYR ETNPQPRKHT LWQATSDFTD
201: GQASMNRQHF LQSPPGILSK HIEKLLQCDH RLFCLSREPE MYFDTLFSDT RQSIFEDPSV SGAQSSSEHM SLFHDALSPS SVMDARAIEG GVGARNWNQI
301: HQSISMNDFL ALLSDQANCE NNPEFEDMKQ LLLSDAQAET SDEKCVMSKV NSFYNLLQTA ANDGKEIGLD NNNNNKRYNK TEEGGIVLDH ASSSMSRKDS
401: FSDLLAHLPR ITSLPKFLFN ISEEDGDA
101: NFPATLLRIG QWEYKSRYEG DLVAKCYFAK HKLVWEVLEQ GLKSKIEIQW SDIMALKASC PEDEPGTLTI VLARRPLFYR ETNPQPRKHT LWQATSDFTD
201: GQASMNRQHF LQSPPGILSK HIEKLLQCDH RLFCLSREPE MYFDTLFSDT RQSIFEDPSV SGAQSSSEHM SLFHDALSPS SVMDARAIEG GVGARNWNQI
301: HQSISMNDFL ALLSDQANCE NNPEFEDMKQ LLLSDAQAET SDEKCVMSKV NSFYNLLQTA ANDGKEIGLD NNNNNKRYNK TEEGGIVLDH ASSSMSRKDS
401: FSDLLAHLPR ITSLPKFLFN ISEEDGDA
001: MVEMMRSENH LRQASKHRNN NFPVKLEIIE DSLEEEHAPL NKRSKLWSNG TSVSKFSLLE EPSPLGLSLK KSPSFQELIE MKLSQSGDDS NSVKKESFGF
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
Arabidopsis Description
ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9ZUI1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.