CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH25265
KRH30399
KRH43068
KRH59198
KRH62407
KRH63018
KRH71579

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24100.1	KRH43068	AT1G73720.1	21798944
AT2G24100.1	KRH59198	AT1G73720.1	21798944
AT2G24100.1	KRH62407	AT1G73720.1	21798944
AT2G24100.1	KRH63018	AT1G73720.1	21798944
AT2G24100.1	KRH71579	AT1G73720.1	21798944
AT4G30780.1	KRH25265	AT5G22360.1	21798944
AT4G30780.1	KRH30399	AT5G22360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63129	Soybean	nucleus	89.12	89.12
KRH72344	Soybean	cytosol	63.6	63.36
KRH58482	Soybean	mitochondrion	46.72	62.41
KRH03001	Soybean	cytosol	56.85	61.46
VIT_11s0037g00810.t01	Wine grape	cytosol	60.79	58.59
CDX76839	Canola	nucleus	45.97	57.24
Bra039229.1-P	Field mustard	nucleus	45.97	57.11
CDY34799	Canola	nucleus	45.78	56.88
AT2G24100.1	Thale cress	nucleus	48.78	55.79
HORVU0Hr1G040420.1	Barley	cytosol	17.64	54.97
PGSC0003DMT400029158	Potato	cytosol	52.35	52.35
Solyc07g005990.2.1	Tomato	cytosol	51.97	51.97
GSMUA_Achr5P04640_001	Banana	nucleus	49.72	51.26
Os06t0186600-02	Rice	cytosol	36.96	50.51
GSMUA_Achr9P22760_001	Banana	nucleus	50.28	50.38
GSMUA_Achr4P05930_001	Banana	cytosol	50.28	50.09
HORVU3Hr1G034290.1	Barley	cytosol	42.96	48.31
Bra024044.1-P	Field mustard	nucleus	50.28	47.18
Zm00001d045084_P002	Maize	cytosol	47.47	47.03
CDY23256	Canola	nucleus	47.47	46.94
CDY39241	Canola	cytosol	49.91	46.91
CDX68693	Canola	cytosol	48.78	46.85
Zm00001d037085_P005	Maize	nucleus	47.09	46.57
Os02t0793800-00	Rice	cytosol	25.33	46.55
AT4G30780.1	Thale cress	nucleus	51.41	46.52
GSMUA_Achr4P12730_001	Banana	mitochondrion	50.84	46.48
KXG19496	Sorghum	nucleus	46.72	46.46
Bra010274.1-P	Field mustard	cytosol	48.41	46.4
CDY28214	Canola	cytosol	49.72	46.33
Bra011221.1-P	Field mustard	nucleus	49.34	46.22
CDY36470	Canola	nucleus	48.03	46.21
CDX72268	Canola	nucleus	48.78	45.94
HORVU7Hr1G031130.2	Barley	nucleus	45.4	45.75
TraesCS7B01G055300.1	Wheat	cytosol	45.22	45.47
Bra011214.1-P	Field mustard	cytosol	14.45	45.29
CDY28207	Canola	cytosol	14.45	45.29
TraesCS7A01G151300.1	Wheat	nucleus	44.65	44.65
TraesCS7D01G153200.1	Wheat	nucleus	44.65	44.65
KXG31260	Sorghum	cytosol	40.71	43.49
KRH44588	Soybean	cytosol	48.97	43.21
KRH47309	Soybean	nucleus	48.22	42.9
Zm00001d052047_P001	Maize	nucleus	38.46	42.01
GSMUA_Achr4P11470_001	Banana	plasma membrane	43.34	40.96
KRH28821	Soybean	peroxisome	29.46	36.77
TraesCS6A01G354900.1	Wheat	mitochondrion	32.27	35.61
TraesCS6B01G387700.1	Wheat	mitochondrion	31.33	34.65
TraesCS6D01G337100.2	Wheat	mitochondrion	30.77	32.54
KRG90540	Soybean	nucleus	15.57	29.75
KRH33824	Soybean	nucleus	15.76	29.58
KRH30889	Soybean	cytosol	13.13	28.46

Protein Annotations

EMBL:ACUP02003674	EnsemblPlants:KRH54987	EnsemblPlantsGene:GLYMA_06G223400	EntrezGene:100792008	PANTHER:PTHR33494	PANTHER:PTHR33494:SF1
ProteinID:KRH54987	ProteinID:KRH54987.1	SEG:seg	UniParc:UPI0002339E51	UniProt:I1KDG3	MapMan:35.2

Description

hypothetical protein

Coordinates

chr6:-:29581085..29584911

Molecular Weight (calculated)

58342.3 Da

IEP (calculated)

5.179

GRAVY (calculated)

-0.639

Length

533 amino acids

Sequence
(BLAST)

001: MVQLMKNSRK PETSSCGDPV KLEIVEDPLE EEHGPHNKRC KPSPSPSPQP QQWSASDDGS VSSPSHLNIL DEPSPLGLRL RKSPSLLDLI QMKLSQGSAQ
101: PSEDLSSGAK RESRAAAVSG AGGADKLKAS NFPASLLRIG SWEYKSRYEG DLVAKCYFAK HKLVWEVLEG GLKSKIEIQW SDIMALKAHC PDDGPSTLTV
201: VLARQPLYFR ETNPQPRKHT LWQATADFTD GQSSKHRLHF LQCPQGLLAK HFEKLIQCDM RLNFLSQQPE IILDSPHFDT QPSAFEDPDN PKDRDLLQVS
301: GKGSSTSCFQ DSGSPQASLL SSFKTEHNDP PGMMLDSLPR DAPSPSSVME CTSIEGSTSS ETDSKGPRNG DQIKLPGLRP SMSVSDFIGQ IELCLTEQIT
401: SGNPPFSDGG SEYKEILEDI AQHLLNDNQV AATSDEKSLM SRVNSLCCLL QKDPVTVQNS HFTEDSSTVE GPHDGKDVKP GAEEPKDTSG GKQALGMSRK
501: DSFSDLLLHL PRITSLPKFL FNISEEDDDS HAK

Best Arabidopsis Sequence Match ( AT4G30780.1 )
(BLAST)

001: MVEMRKSGGL RPESESAARC RDELPVKLEI AEDDLEEEHG PLNKRSRLWS PGTSSSTMAP AKYNPLDEPS PLGLSLKKSP SLLELIQMKI THCGDPKAAE
101: TLKAGALGSG LKRESKTIAA AASVGPTLAP GSIEKLKASN FPASLLKIGQ WEYKSRYEGD LVAKCYFAKH KLVWEVLEQG LKSKIEIQWS DIMALKANCP
201: EDGPGTLTLV LARQPLFFRE TNPQPRKHTL WQATSDFTDG QASMNRQHFL QCAQGIMNKH FEKLVQCDHR LFHLSRQPEI AIDSPYFDAR QSIFEDPSES
301: KGHPFGNLNL STGPSISGTQ NLASPVGAQS SSEHMYLSHE APSPSSVIDA RANEGIGGSE AVNSRNRTDC GQIEAPGIHQ SMSLSDFLAV LCDTKNTTDL
401: NLADDVDGLH QSMSVSDFVA YLSDSRNITD SDQIKVPGLH QSMSVSDFVG LLSDSAGGSH PEHMEKFEIM KQQLLSDNIQ FEAPDEKSLM PRVNSLFNLL
501: YKDPNVAANS QLNTEMSVGL KSEPKGIVSD NNNNNNNNNR VLDTASSSKP QGMLRKDSFS DLLLHLPRIT SLPKFLSNIS EEDGDAYNR

Arabidopsis Description

ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9SUG8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.