CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33824	Soybean	nucleus	77.42	76.06
KRH30889	Soybean	cytosol	30.82	34.96
CDY25203	Canola	cytosol	25.81	29.88
Bra018890.1-P	Field mustard	nucleus	23.66	26.83
CDY22822	Canola	nucleus	23.66	26.83
Bra001166.1-P	Field mustard	mitochondrion	16.49	25.56
AT1G54300.1	Thale cress	cytosol, nucleus, vacuole	24.01	21.34
AT3G05770.1	Thale cress	nucleus	30.47	20.73
CDY05199	Canola	nucleus	28.67	19.95
GSMUA_Achr11P...	Banana	cytosol	24.01	19.82
CDY14664	Canola	cytosol	27.6	18.97
CDX74132	Canola	cytosol	26.88	18.7
Solyc01g100440.1.1	Tomato	nucleus	32.26	17.31
KRH58482	Soybean	mitochondrion	24.01	16.79
CDY27740	Canola	plastid	29.75	16.27
KRH03001	Soybean	cytosol	28.32	16.02
KRH63129	Soybean	nucleus	30.47	15.95
KRH44588	Soybean	cytosol	34.41	15.89
KRH47309	Soybean	nucleus	34.05	15.86
Bra039411.1-P	Field mustard	plastid	29.03	15.85
KRH54987	Soybean	nucleus	29.75	15.57
KRH72344	Soybean	cytosol	29.39	15.33
PGSC0003DMT400007166	Potato	nucleus	31.54	14.89
VIT_14s0060g01240.t01	Wine grape	cytosol	31.54	14.13
KRH28821	Soybean	peroxisome	17.92	11.71
Bra001165.1-P	Field mustard	mitochondrion	8.24	10.0

Protein Annotations

EMBL:ACUP02012625	EnsemblPlants:KRG90540	EnsemblPlantsGene:GLYMA_20G097800	EntrezGene:102661114	PANTHER:PTHR33494	PANTHER:PTHR33494:SF5
ProteinID:KRG90540	ProteinID:KRG90540.1	SEG:seg	UniParc:UPI000295A7FF	UniProt:K7N2L5	MapMan:35.2

Description

hypothetical protein

Coordinates

chr20:-:34089786..34093045

Molecular Weight (calculated)

32484.4 Da

IEP (calculated)

6.508

GRAVY (calculated)

-0.570

Length

279 amino acids

Sequence
(BLAST)

001: MAHSTGSDDS SCQGFSLTQQ EISMASYEYN SSDNQFLYFS YLHDEDHHEY DDDEQTAYKR ALKEFSQLPP PLGLKITMTP EMLQSTRTSQ VAANNKVEKL
101: KAVQFPMNML KIGYFKIEAK YPYELVAKCY YARQKLMWEI LHDGLKYKIE IHCQNISAIR AVIEENSHGI LEIELDKVPS FFREIDPKPK KHTMWTISHD
201: FTDGQASEYR RHYLQFPPGV LDQHYMKLLQ SNNRLLELSR KTFPSSYSAY FNSHIDQGTT QFSFGHDLHA IACPYSLML

Best Arabidopsis Sequence Match ( AT3G05770.2 )
(BLAST)

001: MSMKRSREES QGGGNHNRFV DEGPRLNLPL TKTPELINKI ESYLKVHYTC PHQQTENSSK TSTLPKSPEK LKAMNFPIST IKIGDCVFVA KNPDDIVAKF
101: YFAKKKLLWE FLFGEPVANM PRLKSKIEIQ WNDVSSFEES INSRDETGIL KIELKKRPTF FTETNPQAGK HTQWKQLDYD FTGDQASYYR RHTLHFPPGV
201: LQKNLEKLLT DSFWSKLYKV PFPVHESLYF DIGFENNNSS NGHSKTVGFN VNNGLQHDFS QGIGGVGEGE GNFSMANGGW QRNSYSHVNS LNYNTDNGLL
301: GMQAIPPSSQ VANEHYNNTQ NDYTGSQFGY RMNQDEIQKM QRIGKILESQ AYAVPDTQTK LTSSGMNNGP MYPPAGSYLE SRLLEEWYEH TRRFQQ

Arabidopsis Description

F10A16.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9L9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.