CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH25265
KRH30399
KRH43068
KRH59198
KRH62407
KRH63018
KRH71579

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24100.1	KRH43068	AT1G73720.1	21798944
AT2G24100.1	KRH59198	AT1G73720.1	21798944
AT2G24100.1	KRH62407	AT1G73720.1	21798944
AT2G24100.1	KRH63018	AT1G73720.1	21798944
AT2G24100.1	KRH71579	AT1G73720.1	21798944
AT4G30780.1	KRH25265	AT5G22360.1	21798944
AT4G30780.1	KRH30399	AT5G22360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72344	Soybean	cytosol	76.67	70.65
KRH58482	Soybean	mitochondrion	51.52	63.66
KRH54987	Soybean	nucleus	61.46	56.85
KRH63129	Soybean	nucleus	60.45	55.91
HORVU0Hr1G040420.1	Barley	cytosol	18.46	53.22
VIT_11s0037g00810.t01	Wine grape	cytosol	55.38	49.37
CDX76839	Canola	nucleus	41.78	48.13
CDY34799	Canola	nucleus	41.58	47.79
Bra039229.1-P	Field mustard	nucleus	41.58	47.79
AT2G24100.1	Thale cress	nucleus	44.62	47.21
HORVU3Hr1G034290.1	Barley	cytosol	44.22	45.99
Os06t0186600-02	Rice	cytosol	35.7	45.13
PGSC0003DMT400029158	Potato	cytosol	48.68	45.03
Os02t0793800-00	Rice	cytosol	26.37	44.83
Solyc07g005990.2.1	Tomato	cytosol	48.28	44.65
CDY28207	Canola	cytosol	15.21	44.12
Bra011214.1-P	Field mustard	cytosol	15.21	44.12
GSMUA_Achr9P22760_001	Banana	nucleus	46.86	43.42
GSMUA_Achr4P05930_001	Banana	cytosol	47.06	43.36
Zm00001d045084_P002	Maize	cytosol	46.86	42.94
TraesCS7B01G055300.1	Wheat	cytosol	45.84	42.64
HORVU7Hr1G031130.2	Barley	nucleus	45.44	42.34
KXG19496	Sorghum	nucleus	45.84	42.16
Zm00001d037085_P005	Maize	nucleus	45.84	41.93
GSMUA_Achr5P04640_001	Banana	nucleus	43.81	41.78
TraesCS7A01G151300.1	Wheat	nucleus	45.03	41.65
TraesCS7D01G153200.1	Wheat	nucleus	45.03	41.65
CDY39241	Canola	cytosol	47.06	40.92
Bra024044.1-P	Field mustard	nucleus	47.06	40.85
AT4G30780.1	Thale cress	nucleus	48.48	40.58
CDY23256	Canola	nucleus	44.02	40.26
CDX72268	Canola	nucleus	46.04	40.11
Bra011221.1-P	Field mustard	nucleus	46.25	40.07
CDX68693	Canola	cytosol	45.03	40.0
CDY28214	Canola	cytosol	46.25	39.86
Bra010274.1-P	Field mustard	cytosol	44.83	39.75
KXG31260	Sorghum	cytosol	40.16	39.68
GSMUA_Achr4P12730_001	Banana	mitochondrion	46.25	39.11
CDY36470	Canola	nucleus	43.81	38.99
Zm00001d052047_P001	Maize	nucleus	37.53	37.91
KRH47309	Soybean	nucleus	45.03	37.06
KRH44588	Soybean	cytosol	45.03	36.76
GSMUA_Achr4P11470_001	Banana	plasma membrane	41.58	36.35
TraesCS6A01G354900.1	Wheat	mitochondrion	32.25	32.92
TraesCS6B01G387700.1	Wheat	mitochondrion	32.05	32.78
TraesCS6D01G337100.2	Wheat	mitochondrion	32.05	31.35
KRH28821	Soybean	peroxisome	26.98	31.15
KRH33824	Soybean	nucleus	16.63	28.87
KRH30889	Soybean	cytosol	14.2	28.46
KRG90540	Soybean	nucleus	16.02	28.32

Protein Annotations

EMBL:ACUP02010333	EnsemblPlants:KRH03001	EnsemblPlantsGene:GLYMA_17G071300	EntrezGene:100791924	PANTHER:PTHR33494	PANTHER:PTHR33494:SF1
ProteinID:KRH03001	ProteinID:KRH03001.1	SEG:seg	UniParc:UPI0003DEC9AA	UniProt:A0A0R0FJ58	MapMan:35.2

Description

hypothetical protein

Coordinates

chr17:+:5573671..5577724

Molecular Weight (calculated)

55096.8 Da

IEP (calculated)

5.178

GRAVY (calculated)

-0.612

Length

493 amino acids

Sequence
(BLAST)

001: MFFVSTNCQP NQNKNKTVPL RLEMEEPLQE EHAPPNKRFK SSSASQDEQW NASNGASSSS SPSQYNILDE PSPLGLRLRK SPSLLDLIQM KLSQGNVIIA
101: NTQDENFISS GLKKESRGAA ASGSVEKLKA SNFPASLLRI GSWEYKSKHE GDLVAKCYFA KQKLVWEVIE GELKSKMEIQ WPDIMALKAN CPDTGPSSLT
201: VVLARQPLFF KETNPQPRKH TLWQATSDFT DGAACKHRQH FLEFPQGLLA KHFEKLIQCD ARLNFLSQQP EIILDSPHFD TQPAAFENLD NPEDRDLHLV
301: NGSRSSETDF KGPRNLDQIK LPGLQPSMSV SDFIGHIEHC LSEQITSGNP SFCGGRSELQ EMLEEIAQHL LNDNQVITTS DEISLMTRVN SLCCLLQKDP
401: AGLQSSHDKE SAVAEGPDDE KRIQLSHDLE SMQNNKIKMD VKPAEEDFRD ASGSKQTLGM SRKDSFAELL HQLPRIASLS KFLFDISEED SDS

Best Arabidopsis Sequence Match ( AT2G24100.1 )
(BLAST)

001: MVEMMRSENH LRQASKHRNN NFPVKLEIIE DSLEEEHAPL NKRSKLWSNG TSVSKFSLLE EPSPLGLSLK KSPSFQELIE MKLSQSGDDS NSVKKESFGF
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED

Arabidopsis Description

ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9ZUI1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.