Factsheet for Bra024044.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006623.1-P
Bra020187.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30780.1	Bra006623.1-P	AT5G22360.1	21798944
AT4G30780.1	Bra020187.1-P	AT5G22360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39241	Canola	cytosol	98.06	98.24
CDX72268	Canola	nucleus	89.44	89.75
Bra011221.1-P	Field mustard	nucleus	82.92	82.78
Bra010274.1-P	Field mustard	cytosol	78.35	80.04
AT4G30780.1	Thale cress	nucleus	79.58	76.74
Bra011214.1-P	Field mustard	cytosol	20.25	67.65
Bra039229.1-P	Field mustard	nucleus	48.06	63.64
HORVU0Hr1G040420.1	Barley	cytosol	17.43	57.89
KRH63129	Soybean	nucleus	47.89	51.03
KRH54987	Soybean	nucleus	47.18	50.28
VIT_11s0037g00810.t01	Wine grape	cytosol	48.24	49.55
KRH03001	Soybean	cytosol	40.85	47.06
Solyc07g005990.2.1	Tomato	cytosol	43.84	46.72
PGSC0003DMT400029158	Potato	cytosol	43.66	46.53
KRH72344	Soybean	cytosol	42.96	45.61
Os02t0793800-00	Rice	cytosol	23.24	45.52
Os06t0186600-02	Rice	cytosol	31.16	45.38
HORVU3Hr1G034290.1	Barley	cytosol	37.68	45.15
GSMUA_Achr9P22760_001	Banana	nucleus	41.73	44.55
Zm00001d037085_P005	Maize	nucleus	41.37	43.6
KXG19496	Sorghum	nucleus	41.02	43.47
GSMUA_Achr4P05930_001	Banana	cytosol	40.67	43.18
GSMUA_Achr5P04640_001	Banana	nucleus	39.26	43.13
Zm00001d045084_P002	Maize	cytosol	40.85	43.12
HORVU7Hr1G031130.2	Barley	nucleus	40.14	43.1
TraesCS7B01G055300.1	Wheat	cytosol	39.96	42.83
TraesCS7A01G151300.1	Wheat	nucleus	39.96	42.59
TraesCS7D01G153200.1	Wheat	nucleus	39.61	42.21
KXG31260	Sorghum	cytosol	36.62	41.68
GSMUA_Achr4P12730_001	Banana	mitochondrion	41.9	40.82
KRH58482	Soybean	mitochondrion	28.17	40.1
Zm00001d052047_P001	Maize	nucleus	34.33	39.96
GSMUA_Achr4P11470_001	Banana	plasma membrane	38.03	38.3
Bra018890.1-P	Field mustard	nucleus	15.32	35.37
TraesCS6B01G387700.1	Wheat	mitochondrion	29.23	34.44
TraesCS6A01G354900.1	Wheat	mitochondrion	28.7	33.75
TraesCS6D01G337100.2	Wheat	mitochondrion	28.17	31.75
Bra001166.1-P	Field mustard	mitochondrion	9.33	29.44
Bra039411.1-P	Field mustard	plastid	16.73	18.59
Bra001165.1-P	Field mustard	mitochondrion	5.63	13.91

Protein Annotations

EnsemblPlants:Bra024044.1	EnsemblPlants:Bra024044.1-P	EnsemblPlantsGene:Bra024044	PANTHER:PTHR33494	PANTHER:PTHR33494:SF1	SEG:seg
UniParc:UPI0002540E91	UniProt:M4E5J0	MapMan:35.2	:	:	:

Description

AT4G30780 (E=2e-256) | unknown protein

Coordinates

chrA03:+:28000834..28003030

Molecular Weight (calculated)

62365.3 Da

IEP (calculated)

5.644

GRAVY (calculated)

-0.485

Length

568 amino acids

Sequence
(BLAST)

001: MVEMRRSESE LSAKRRAEFP VKLEIVEDDL EEEHGPLNKR SRLWSSGTSS SPMAPAKYNP LDEPSPLGLS LRKSPSLLDL IQMRLTQSGD SKAETLQTTG
101: VKKESKCIAA ASAGAALAPG SIEKLKASNF PASVLKIGKW EYKSRYEGDL VAKCYFAKHK LVWEVLEQGL KSKIEIQWSD IVGLKANCPE DGPGTLTLVL
201: SRQPLFFRET NPQPRKHTLW QATSDFTDGQ ASLYRKHFLQ CAQGIMNKHF EKLVQCDHRL FHLSREPEII MDFPYFDARQ SIFEDPSESK GYPYGNSNLG
301: SGPSIASPVG AQSSSEHMYL SHEAPSPSSV IDARANEGGI GGAEAVNSRN TTDCGQIGLH KAISLSDFLA VLGDSKNTMD SNQVEEEAGL NQSMSVSDLV
401: AFLSDSRNIT DSSQIKVPGL QQSISVSDFV GLLSDSAGGN HPEHLEKFEI LKQQLLSDNI QFDTPDEKSL MPRVNSLFNL LYKDPSVAAN SQLNTEVSGG
501: FKSELHDLNG TVSANNNNRV LDPASSSKPQ GMLRKDSFSD LLLHLPRITS LPKFLSNISE EDGDAYNR

Best Arabidopsis Sequence Match ( AT4G30780.1 )
(BLAST)

001: MVEMRKSGGL RPESESAARC RDELPVKLEI AEDDLEEEHG PLNKRSRLWS PGTSSSTMAP AKYNPLDEPS PLGLSLKKSP SLLELIQMKI THCGDPKAAE
101: TLKAGALGSG LKRESKTIAA AASVGPTLAP GSIEKLKASN FPASLLKIGQ WEYKSRYEGD LVAKCYFAKH KLVWEVLEQG LKSKIEIQWS DIMALKANCP
201: EDGPGTLTLV LARQPLFFRE TNPQPRKHTL WQATSDFTDG QASMNRQHFL QCAQGIMNKH FEKLVQCDHR LFHLSRQPEI AIDSPYFDAR QSIFEDPSES
301: KGHPFGNLNL STGPSISGTQ NLASPVGAQS SSEHMYLSHE APSPSSVIDA RANEGIGGSE AVNSRNRTDC GQIEAPGIHQ SMSLSDFLAV LCDTKNTTDL
401: NLADDVDGLH QSMSVSDFVA YLSDSRNITD SDQIKVPGLH QSMSVSDFVG LLSDSAGGSH PEHMEKFEIM KQQLLSDNIQ FEAPDEKSLM PRVNSLFNLL
501: YKDPNVAANS QLNTEMSVGL KSEPKGIVSD NNNNNNNNNR VLDTASSSKP QGMLRKDSFS DLLLHLPRIT SLPKFLSNIS EEDGDAYNR

Arabidopsis Description

ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9SUG8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.