Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G337100.2 | Wheat | mitochondrion | 86.72 | 82.94 |
| TraesCS6A01G354900.1 | Wheat | mitochondrion | 80.08 | 79.92 |
| HORVU0Hr1G040420.1 | Barley | cytosol | 25.52 | 71.93 |
| Os02t0793800-00 | Rice | cytosol | 25.73 | 42.76 |
| Zm00001d052047_P001 | Maize | nucleus | 40.25 | 39.75 |
| KXG31260 | Sorghum | cytosol | 40.46 | 39.08 |
| Bra039229.1-P | Field mustard | nucleus | 33.61 | 37.76 |
| CDX76839 | Canola | nucleus | 33.2 | 37.38 |
| CDY34799 | Canola | nucleus | 33.2 | 37.3 |
| TraesCS7B01G055300.1 | Wheat | cytosol | 40.66 | 36.98 |
| AT2G24100.1 | Thale cress | nucleus | 35.27 | 36.48 |
| PGSC0003DMT400036859 | Potato | cytosol | 36.72 | 34.24 |
| GSMUA_Achr5P04640_001 | Banana | nucleus | 36.72 | 34.24 |
| VIT_11s0037g00810.t01 | Wine grape | cytosol | 38.59 | 33.63 |
| Solyc03g117680.2.1 | Tomato | cytosol | 36.72 | 33.15 |
| KRH03001 | Soybean | cytosol | 32.78 | 32.05 |
| PGSC0003DMT400074432 | Potato | nucleus | 33.4 | 31.76 |
| Solyc07g005990.2.1 | Tomato | cytosol | 34.85 | 31.52 |
| KRH54987 | Soybean | nucleus | 34.65 | 31.33 |
| PGSC0003DMT400029158 | Potato | cytosol | 34.65 | 31.33 |
| KRH63129 | Soybean | nucleus | 34.44 | 31.14 |
| CDY23256 | Canola | nucleus | 33.82 | 30.24 |
| CDY36470 | Canola | nucleus | 34.65 | 30.14 |
| CDX68693 | Canola | cytosol | 34.65 | 30.09 |
| Solyc06g068540.2.1 | Tomato | cytosol | 32.57 | 29.79 |
| KRH72344 | Soybean | cytosol | 32.99 | 29.72 |
| CDX72268 | Canola | nucleus | 34.85 | 29.68 |
| VIT_09s0018g01680.t01 | Wine grape | cytosol | 32.57 | 29.57 |
| AT4G30780.1 | Thale cress | nucleus | 35.89 | 29.37 |
| KRH58482 | Soybean | mitochondrion | 24.27 | 29.32 |
| Bra010274.1-P | Field mustard | cytosol | 33.82 | 29.32 |
| TraesCS5B01G160900.1 | Wheat | nucleus | 32.16 | 29.3 |
| CDY39241 | Canola | cytosol | 34.44 | 29.28 |
| Bra024044.1-P | Field mustard | nucleus | 34.44 | 29.23 |
| CDY28214 | Canola | cytosol | 34.44 | 29.02 |
| Bra011221.1-P | Field mustard | nucleus | 34.02 | 28.82 |
| KRH44588 | Soybean | cytosol | 33.4 | 26.66 |
| KRH47309 | Soybean | nucleus | 32.78 | 26.38 |
| CDY28207 | Canola | cytosol | 9.13 | 25.88 |
| Bra011214.1-P | Field mustard | cytosol | 9.13 | 25.88 |
| TraesCS5B01G505000.1 | Wheat | cytosol | 22.2 | 21.93 |
| KRH28821 | Soybean | peroxisome | 18.05 | 20.37 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G387700.1 | EnsemblPlantsGene:TraesCS6B01G387700 | PANTHER:PTHR33494 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr6B:+:662510678..662513431
Molecular Weight (calculated)
53153.0 Da
IEP (calculated)
6.250
GRAVY (calculated)
-0.427
Length
482 amino acids
Sequence
(BLAST)
(BLAST)
001: MVQPRGRPRR KRHASHTAAA VAPSASPAGN LEEEGLLGDG NEATQKRVRT AQPSQLPLPL QDMFNIINEP LPLGLRLKKS PSFVDLICTC LSKKNSTKEN
101: STEEISTKEI STKGRSAMKD IVSKPPLKKD VVKASNFPAN FLKIGNWEYT SQYEGDLVAK CYYAKHKLVW EVLNNGLKSK IEVQWLDITA LKATCPEEGD
201: GTLELMLSRP PMFFQETHPQ PRKHTLWLAA PDFTCGQAIM CRRHVLRCSS SVLSRNFEKL IQCDERLNEL SRQPIIMSDS PFIGSISSIF GNPNESAGPS
301: SMFAHHVSPY DASSVVQRDG VKHHQPLNIG ATASDVQAKI VVQEQRNLNL CNHASPEVPK EFQEIAESLL SDTHALPSAD EKYLLARVDS FSNLIEKGAA
401: PSTVSVPERN DTIAAGEVGY DAFAEELGFC FEDEEQWAPA GRTVDGGAGP PAISRKESVP GLFENLYRRI PSMSELFDIA ED
101: STEEISTKEI STKGRSAMKD IVSKPPLKKD VVKASNFPAN FLKIGNWEYT SQYEGDLVAK CYYAKHKLVW EVLNNGLKSK IEVQWLDITA LKATCPEEGD
201: GTLELMLSRP PMFFQETHPQ PRKHTLWLAA PDFTCGQAIM CRRHVLRCSS SVLSRNFEKL IQCDERLNEL SRQPIIMSDS PFIGSISSIF GNPNESAGPS
301: SMFAHHVSPY DASSVVQRDG VKHHQPLNIG ATASDVQAKI VVQEQRNLNL CNHASPEVPK EFQEIAESLL SDTHALPSAD EKYLLARVDS FSNLIEKGAA
401: PSTVSVPERN DTIAAGEVGY DAFAEELGFC FEDEEQWAPA GRTVDGGAGP PAISRKESVP GLFENLYRRI PSMSELFDIA ED
001: MVEMMRSENH LRQASKHRNN NFPVKLEIIE DSLEEEHAPL NKRSKLWSNG TSVSKFSLLE EPSPLGLSLK KSPSFQELIE MKLSQSGDDS NSVKKESFGF
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
Arabidopsis Description
ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9ZUI1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.