Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400074432 | Potato | nucleus | 90.51 | 94.08 |
| Solyc03g117680.2.1 | Tomato | cytosol | 56.55 | 55.81 |
| HORVU0Hr1G040420.1 | Barley | cytosol | 17.08 | 52.63 |
| Os06t0186600-02 | Rice | cytosol | 35.29 | 47.69 |
| HORVU3Hr1G034290.1 | Barley | cytosol | 41.94 | 46.62 |
| Os02t0793800-00 | Rice | cytosol | 25.05 | 45.52 |
| VIT_09s0018g01680.t01 | Wine grape | cytosol | 45.35 | 45.01 |
| Solyc07g005990.2.1 | Tomato | cytosol | 44.78 | 44.28 |
| Zm00001d045084_P002 | Maize | cytosol | 44.78 | 43.87 |
| KXG19496 | Sorghum | nucleus | 44.59 | 43.84 |
| HORVU7Hr1G031130.2 | Barley | nucleus | 43.64 | 43.48 |
| Zm00001d037085_P005 | Maize | nucleus | 43.64 | 42.67 |
| TraesCS7B01G055300.1 | Wheat | cytosol | 42.88 | 42.64 |
| GSMUA_Achr5P04640_001 | Banana | nucleus | 41.75 | 42.55 |
| GSMUA_Achr9P22760_001 | Banana | nucleus | 42.88 | 42.48 |
| TraesCS7D01G153200.1 | Wheat | nucleus | 42.88 | 42.4 |
| TraesCS7A01G151300.1 | Wheat | nucleus | 42.5 | 42.03 |
| KXG31260 | Sorghum | cytosol | 39.28 | 41.48 |
| GSMUA_Achr4P05930_001 | Banana | cytosol | 40.99 | 40.37 |
| KRH44588 | Soybean | cytosol | 45.35 | 39.57 |
| KRH47309 | Soybean | nucleus | 44.21 | 38.9 |
| GSMUA_Achr4P12730_001 | Banana | mitochondrion | 42.88 | 38.77 |
| Zm00001d052047_P001 | Maize | nucleus | 34.72 | 37.5 |
| GSMUA_Achr4P11470_001 | Banana | plasma membrane | 38.33 | 35.82 |
| KRH28821 | Soybean | peroxisome | 27.51 | 33.96 |
| TraesCS6A01G354900.1 | Wheat | mitochondrion | 30.36 | 33.13 |
| TraesCS6B01G387700.1 | Wheat | mitochondrion | 29.79 | 32.57 |
| TraesCS6D01G337100.2 | Wheat | mitochondrion | 28.46 | 29.76 |
| Solyc01g100440.1.1 | Tomato | nucleus | 24.1 | 24.42 |
Protein Annotations
| EnsemblPlants:Solyc06g068540.2.1 | EnsemblPlantsGene:Solyc06g068540.2 | PANTHER:PTHR33494 | PANTHER:PTHR33494:SF1 | SEG:seg | UniParc:UPI00027663AA |
| UniProt:K4C828 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr6:-:42474443..42479283
Molecular Weight (calculated)
59241.6 Da
IEP (calculated)
5.082
GRAVY (calculated)
-0.683
Length
527 amino acids
Sequence
(BLAST)
(BLAST)
001: MHPSRNYTGE APSELRWQRG KMLPVKREVD LENFSDEERC KLDKRFKLSS SLQQQLGEGA CNFTVSSSFM SVDEPSPLGL RLRKTPSLLD MFQTMLGGTS
101: MVESLGKKEQ KRSTAMIEKL KASNFPGSVL RIGTWEYKSR YEGDLVAKCY FAKHKLVWEV LDGGLKNKIE IQWSDIIGLK ANYPDDAPGT LDIVLARQPL
201: FFRETDPQPR KHTLWQATSD FTDGQASIHR RHYLECPHGL LGKHIEKLVQ CDPRLNFLSQ QAEMTLDSPY FESQMSGFED THERDREFDL NNEGSPNFID
301: YTSPSGAQCS SKSKQDPRPL ECIHQEKPSP RSGASDDMES REVDQRKGLS NLNQLRVSGI HPSVSMSDLV SQLEQRVSEQ TTLKVINLAS DERPSSEILE
401: EISQSLLSDT QNVSSSDEKS LMSRVNSLCC LLQKDPATVQ ASENCGDVSD ERRVNEINFI PTAPLGRKDE EDSSMPEDES ADLSSCKPTS TMSRKDSVGD
501: LLLNLPRIAS LPHFLFLCDD STGNQAR
101: MVESLGKKEQ KRSTAMIEKL KASNFPGSVL RIGTWEYKSR YEGDLVAKCY FAKHKLVWEV LDGGLKNKIE IQWSDIIGLK ANYPDDAPGT LDIVLARQPL
201: FFRETDPQPR KHTLWQATSD FTDGQASIHR RHYLECPHGL LGKHIEKLVQ CDPRLNFLSQ QAEMTLDSPY FESQMSGFED THERDREFDL NNEGSPNFID
301: YTSPSGAQCS SKSKQDPRPL ECIHQEKPSP RSGASDDMES REVDQRKGLS NLNQLRVSGI HPSVSMSDLV SQLEQRVSEQ TTLKVINLAS DERPSSEILE
401: EISQSLLSDT QNVSSSDEKS LMSRVNSLCC LLQKDPATVQ ASENCGDVSD ERRVNEINFI PTAPLGRKDE EDSSMPEDES ADLSSCKPTS TMSRKDSVGD
501: LLLNLPRIAS LPHFLFLCDD STGNQAR
001: MVEMMRSENH LRQASKHRNN NFPVKLEIIE DSLEEEHAPL NKRSKLWSNG TSVSKFSLLE EPSPLGLSLK KSPSFQELIE MKLSQSGDDS NSVKKESFGF
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
Arabidopsis Description
ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9ZUI1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.