Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g068540.2.1 | Tomato | cytosol | 94.08 | 90.51 |
| PGSC0003DMT400036859 | Potato | cytosol | 58.97 | 57.83 |
| HORVU0Hr1G040420.1 | Barley | cytosol | 18.34 | 54.39 |
| HORVU3Hr1G034290.1 | Barley | cytosol | 44.38 | 47.47 |
| Os06t0186600-02 | Rice | cytosol | 36.29 | 47.18 |
| Os02t0793800-00 | Rice | cytosol | 26.23 | 45.86 |
| VIT_09s0018g01680.t01 | Wine grape | cytosol | 47.14 | 45.01 |
| PGSC0003DMT400029158 | Potato | cytosol | 47.14 | 44.84 |
| Zm00001d045084_P002 | Maize | cytosol | 46.94 | 44.24 |
| HORVU7Hr1G031130.2 | Barley | nucleus | 46.15 | 44.23 |
| KXG19496 | Sorghum | nucleus | 46.55 | 44.03 |
| TraesCS7B01G055300.1 | Wheat | cytosol | 45.36 | 43.4 |
| TraesCS7D01G153200.1 | Wheat | nucleus | 45.36 | 43.15 |
| Zm00001d037085_P005 | Maize | nucleus | 45.56 | 42.86 |
| TraesCS7A01G151300.1 | Wheat | nucleus | 44.97 | 42.78 |
| GSMUA_Achr5P04640_001 | Banana | nucleus | 43.59 | 42.75 |
| GSMUA_Achr9P22760_001 | Banana | nucleus | 44.58 | 42.48 |
| KXG31260 | Sorghum | cytosol | 40.83 | 41.48 |
| GSMUA_Achr4P05930_001 | Banana | cytosol | 42.41 | 40.19 |
| KRH44588 | Soybean | cytosol | 47.73 | 40.07 |
| KRH47309 | Soybean | nucleus | 46.75 | 39.57 |
| GSMUA_Achr4P12730_001 | Banana | mitochondrion | 44.77 | 38.94 |
| Zm00001d052047_P001 | Maize | nucleus | 37.48 | 38.93 |
| GSMUA_Achr4P11470_001 | Banana | plasma membrane | 39.65 | 35.64 |
| KRH28821 | Soybean | peroxisome | 28.99 | 34.43 |
| TraesCS6A01G354900.1 | Wheat | mitochondrion | 32.35 | 33.95 |
| TraesCS6B01G387700.1 | Wheat | mitochondrion | 31.76 | 33.4 |
| TraesCS6D01G337100.2 | Wheat | mitochondrion | 30.57 | 30.75 |
| PGSC0003DMT400007166 | Potato | nucleus | 25.25 | 21.66 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400074432 | EnsemblPlantsGene:PGSC0003DMG400028923 | PANTHER:PTHR33494 | PANTHER:PTHR33494:SF1 | PGSC:PGSC0003DMG400028923 | SEG:seg |
| UniParc:UPI0002957F7B | UniProt:M1CTN4 | MapMan:35.2 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400028923]
Coordinates
chr6:-:50216011..50220960
Molecular Weight (calculated)
56822.8 Da
IEP (calculated)
4.953
GRAVY (calculated)
-0.654
Length
507 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPVKREVDL ENFSDEERCQ LDKRSKLYSS LQQQLGEGAC DFPVSSSFVS LDEPSPLGLR LKKSPSLVDM IQMKLGGTSM VESLGKKEQK RSTAMIEKLK
101: ASNFPGSVLR IGTWEYKSRY EGDLVAKCYF AKHKLVWEVL DGGLKNKIEI QWSDIIGLKA NYPDDAPGTL DIVLARQPLF FRETDPQPRK HTLWQATSDF
201: TDGQASIHRR HYLECPHGLL GKHIEKLVQC DPRLNFLSQQ AEMTLDSPYF ESQMSGFEDT HERDREFDLN NEGSPNFIDY TSPSGAQCSS KNKQDPRPLE
301: CIHQEKPSPR SGASEDMESR EVEQRKGLSN LNQLRVSGVH PSVSMSDLVS QLEQRVSEQT TSKVINLAND ERRSSEILEE ISKSLLSDTQ NVSSSDEKSL
401: MSRVNSLCCL LQKDPATAHA SENCGDVVSD ERRVNEINFI PTAPLGREDV EDPSMPEDES TDLSGCKPTS TMSRKDSVGD LLLNLPRIAS LPHFLFLCDD
501: SAGNQAR
101: ASNFPGSVLR IGTWEYKSRY EGDLVAKCYF AKHKLVWEVL DGGLKNKIEI QWSDIIGLKA NYPDDAPGTL DIVLARQPLF FRETDPQPRK HTLWQATSDF
201: TDGQASIHRR HYLECPHGLL GKHIEKLVQC DPRLNFLSQQ AEMTLDSPYF ESQMSGFEDT HERDREFDLN NEGSPNFIDY TSPSGAQCSS KNKQDPRPLE
301: CIHQEKPSPR SGASEDMESR EVEQRKGLSN LNQLRVSGVH PSVSMSDLVS QLEQRVSEQT TSKVINLAND ERRSSEILEE ISKSLLSDTQ NVSSSDEKSL
401: MSRVNSLCCL LQKDPATAHA SENCGDVVSD ERRVNEINFI PTAPLGREDV EDPSMPEDES TDLSGCKPTS TMSRKDSVGD LLLNLPRIAS LPHFLFLCDD
501: SAGNQAR
001: MVEMMRSENH LRQASKHRNN NFPVKLEIIE DSLEEEHAPL NKRSKLWSNG TSVSKFSLLE EPSPLGLSLK KSPSFQELIE MKLSQSGDDS NSVKKESFGF
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
Arabidopsis Description
ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9ZUI1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.