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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc01g100440.1.1 Tomato nucleus 54.48 61.92
CDY25203 Canola cytosol 13.2 32.37
Bra018890.1-P Field mustard nucleus 13.37 32.11
CDY22822 Canola nucleus 13.37 32.11
KRH33824 Soybean nucleus 15.4 32.04
KRG90540 Soybean nucleus 14.89 31.54
KRH30889 Soybean cytosol 12.35 29.67
AT1G54300.1 Thale cress cytosol, nucleus, vacuole 14.21 26.75
PGSC0003DMT400074432 Potato nucleus 21.66 25.25
CDY05199 Canola nucleus 17.09 25.19
PGSC0003DMT400029158 Potato cytosol 22.67 25.14
GSMUA_Achr11P... Banana cytosol 14.21 24.85
AT3G05770.1 Thale cress nucleus 17.09 24.63
PGSC0003DMT400036859 Potato cytosol 21.15 24.18
Bra001166.1-P Field mustard mitochondrion 7.28 23.89
CDX74132 Canola cytosol 14.72 21.7
CDY14664 Canola cytosol 14.55 21.18
Bra039411.1-P Field mustard plastid 18.1 20.94
VIT_14s0060g01240.t01 Wine grape cytosol 21.83 20.71
CDY27740 Canola plastid 17.77 20.59
Bra001165.1-P Field mustard mitochondrion 4.74 12.17
Protein Annotations
EnsemblPlants:PGSC0003DMT400007166EnsemblPlantsGene:PGSC0003DMG400002772PANTHER:PTHR33494PANTHER:PTHR33494:SF5PGSC:PGSC0003DMG400002772SEG:seg
UniParc:UPI0002966180UniProt:M0ZSK8MapMan:35.2:::
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400002772]
Coordinates
chr1:-:78117446..78120992
Molecular Weight (calculated)
66703.8 Da
IEP (calculated)
4.944
GRAVY (calculated)
-0.833
Length
591 amino acids
Sequence
(BLAST)
001: MVIGDDHEGL YDLDHQRLYG VDHQSSESHQ SSESHQSSES HQSSESMNTE SDDVNAQLKS RRMSSESEED GDDHEGLYDL DHQRLYGVDH QSSESHQSSE
101: SMNTESDDVN AQLKSRRMSS ESEEDGLSKK FRTFPEFNSN PEVQDTELIG LTLSKTPSFV NLLESKLSQV KMKNNGSTRR VGRPSKSSRN MEDFAIVSER
201: LKAANFPAIK LSIGVWERVS KHEGDLIAKC YYAKRKLVWE LLDGPLKSKI EIQWSDIIAI RAIMPPGEQP GVLELELKEP PTFHRETNPQ PRKHTLWQQT
301: SDFTGGQAPI HRRHYVRFAP GVLDRHYEKL LRCDARLNEL SKKPFPSQIC PFFEQPDYNN DQVSDFSIGN DYGSQLLLNY PFHHLPSSSS TALLPNVREP
401: LRQFSSSYPV AGESISGIWG GQGSNNLVNV AMGNQAIGML PGGSTPDQQA DWITTTQDHQ AMYQQNDSIG NGQVDHTMLN NLKNYLLEEN QVTSYNEPAF
501: PYSLPEHHEN RSLVAATGDV HGLDSSYQMV NNNYAENVVP NYEMAYMQPN ANWMFPQQAN DQFSTNYATV SGGYPTQDVN QEAQSVWKTT N
Best Arabidopsis Sequence Match ( AT3G05770.2 )
(BLAST)
001: MSMKRSREES QGGGNHNRFV DEGPRLNLPL TKTPELINKI ESYLKVHYTC PHQQTENSSK TSTLPKSPEK LKAMNFPIST IKIGDCVFVA KNPDDIVAKF
101: YFAKKKLLWE FLFGEPVANM PRLKSKIEIQ WNDVSSFEES INSRDETGIL KIELKKRPTF FTETNPQAGK HTQWKQLDYD FTGDQASYYR RHTLHFPPGV
201: LQKNLEKLLT DSFWSKLYKV PFPVHESLYF DIGFENNNSS NGHSKTVGFN VNNGLQHDFS QGIGGVGEGE GNFSMANGGW QRNSYSHVNS LNYNTDNGLL
301: GMQAIPPSSQ VANEHYNNTQ NDYTGSQFGY RMNQDEIQKM QRIGKILESQ AYAVPDTQTK LTSSGMNNGP MYPPAGSYLE SRLLEEWYEH TRRFQQ
Arabidopsis Description
F10A16.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9L9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.