Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G54300.1 | Thale cress | cytosol, nucleus, vacuole | 46.34 | 60.51 |
| Bra018890.1-P | Field mustard | nucleus | 25.85 | 43.09 |
| CDY22822 | Canola | nucleus | 25.85 | 43.09 |
| CDY25203 | Canola | cytosol | 24.88 | 42.32 |
| Bra001166.1-P | Field mustard | mitochondrion | 15.37 | 35.0 |
| CDY05199 | Canola | nucleus | 30.98 | 31.67 |
| CDX74132 | Canola | cytosol | 30.49 | 31.17 |
| CDY14664 | Canola | cytosol | 30.73 | 31.03 |
| KRG90540 | Soybean | nucleus | 20.73 | 30.47 |
| KRH33824 | Soybean | nucleus | 20.0 | 28.87 |
| KRH30889 | Soybean | cytosol | 14.88 | 24.8 |
| Bra039411.1-P | Field mustard | plastid | 30.49 | 24.46 |
| CDY27740 | Canola | plastid | 29.76 | 23.92 |
| AT2G24100.1 | Thale cress | nucleus | 24.15 | 21.24 |
| GSMUA_Achr11P... | Banana | cytosol | 16.59 | 20.12 |
| Solyc01g100440.1.1 | Tomato | nucleus | 24.88 | 19.62 |
| Bra001165.1-P | Field mustard | mitochondrion | 10.73 | 19.13 |
| AT4G30780.1 | Thale cress | nucleus | 26.59 | 18.51 |
| PGSC0003DMT400007166 | Potato | nucleus | 24.63 | 17.09 |
| VIT_14s0060g01240.t01 | Wine grape | cytosol | 23.66 | 15.57 |
Protein Annotations
| MapMan:35.2 | EntrezGene:819746 | ProteinID:AAF26079.1 | ProteinID:AEE74295.1 | ArrayExpress:AT3G05770 | EnsemblPlantsGene:AT3G05770 |
| RefSeq:AT3G05770 | TAIR:AT3G05770 | RefSeq:AT3G05770-TAIR-G | EnsemblPlants:AT3G05770.1 | TAIR:AT3G05770.1 | Unigene:At.48621 |
| GO:GO:0000003 | GO:GO:0008150 | GO:GO:0009856 | GO:GO:0048868 | RefSeq:NP_187228.1 | PO:PO:0001017 |
| PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR33494 | PANTHER:PTHR33494:SF5 | UniProt:Q9M9L9 | UniParc:UPI00000A1520 |
| SEG:seg | : | : | : | : | : |
Description
F10A16.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9L9]
Coordinates
chr3:-:1710013..1712165
Molecular Weight (calculated)
46936.3 Da
IEP (calculated)
9.009
GRAVY (calculated)
-0.787
Length
410 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMKRSREES QGGGNHNRFV DEGPRLNLPL TKTPELINKI ESYLKVHYTC PHQQTENSSK TSTLPKSPEK LKAMNFPIST IKIGDCVFVA KNPDDIVAKF
101: YFAKKKLLWE FLFGEPVANM PRLKSKIEIQ WNDVSSFEES INSRDETGIL KIELKKRPTF FTETNPQAGK HTQWKQLDYD FTGDQASYYR RHTLHFPPGV
201: LQKNLEKLLT DSFWSKLYKV PFPVHESLYF DIGFENNNSS NGHSKTVGFN VNNGLQHDFS QVRDLKERKK IITLIGIGGV GEGEGNFSMA NGGWQRNSYS
301: HVNSLNYNTD NGLLGMQAIP PSSQVANEHY NNTQNDYTGS QFGYRMNQDE IQKMQRIGKI LESQAYAVPD TQTKLTSSGM NNGPMYPPAG SYLESRLLEE
401: WYEHTRRFQQ
101: YFAKKKLLWE FLFGEPVANM PRLKSKIEIQ WNDVSSFEES INSRDETGIL KIELKKRPTF FTETNPQAGK HTQWKQLDYD FTGDQASYYR RHTLHFPPGV
201: LQKNLEKLLT DSFWSKLYKV PFPVHESLYF DIGFENNNSS NGHSKTVGFN VNNGLQHDFS QVRDLKERKK IITLIGIGGV GEGEGNFSMA NGGWQRNSYS
301: HVNSLNYNTD NGLLGMQAIP PSSQVANEHY NNTQNDYTGS QFGYRMNQDE IQKMQRIGKI LESQAYAVPD TQTKLTSSGM NNGPMYPPAG SYLESRLLEE
401: WYEHTRRFQQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.