CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14664	Canola	cytosol	54.86	54.19
CDY25203	Canola	cytosol	27.93	46.47
CDY22822	Canola	nucleus	28.18	45.94
CDY05199	Canola	nucleus	35.16	35.16
AT1G54300.1	Thale cress	cytosol, nucleus, vacuole	26.93	34.39
AT3G05770.1	Thale cress	nucleus	31.17	30.49
KRG90540	Soybean	nucleus	18.7	26.88
CDY27740	Canola	plastid	33.67	26.47
KRH33824	Soybean	nucleus	18.7	26.41
KRH30889	Soybean	cytosol	14.21	23.17
CDX76839	Canola	nucleus	21.45	20.09
GSMUA_Achr11P...	Banana	cytosol	16.71	19.82
CDY34799	Canola	nucleus	20.95	19.58
Solyc01g100440.1.1	Tomato	nucleus	22.69	17.5
CDX72268	Canola	nucleus	23.44	16.61
CDY39241	Canola	cytosol	22.69	16.05
CDY23256	Canola	nucleus	21.45	15.96
CDY36470	Canola	nucleus	21.95	15.88
CDY28207	Canola	cytosol	6.73	15.88
VIT_14s0060g01240.t01	Wine grape	cytosol	24.44	15.73
CDX68693	Canola	cytosol	21.45	15.5
CDY28214	Canola	cytosol	21.2	14.86
PGSC0003DMT400007166	Potato	nucleus	21.7	14.72

Protein Annotations

EnsemblPlants:CDX74132	EnsemblPlantsGene:GSBRNA2T00111891001	PANTHER:PTHR33494	PANTHER:PTHR33494:SF5	ProteinID:CDX74132	ProteinID:CDX74132.1
SEG:seg	UniParc:UPI0004EF4162	MapMan:35.2	:	:	:

Description

BnaA03g29150D

Coordinates

chrLK031800:+:1471107..1473332

Molecular Weight (calculated)

46089.1 Da

IEP (calculated)

5.725

GRAVY (calculated)

-0.608

Length

401 amino acids

Sequence
(BLAST)

001: MDTREEESQD DPSRGLFPPL NLLFTPTPEF IALIEVQLQQ DYSSPHQQNF HYTTEHPKTL TPSETPKNHE KLKAVDSQIY KITIGQWTHT RVYPDDIKAK
101: FYFAKKRIIW EILDDVETGT QVERLKRKIE SQWSDVLSFR ATYNSNDGAG ILEVELGKRP TFFIETNPQR GKHTLWKICP DFTLNQSASI YRRHTLHFFP
201: GDLQKTLDKL VSGDSFWSKL AKVSFPTLQS LYFDFGFGDS NNNAAITLSH YGHYQTVPVF GQVPEPDVNV NFNVPTQFFP NDGRQMNSFV QDVDFPGTQV
301: IQPSYQLIGG RYFSGTQFNN PIIQDQTRNT MELRGNQAYE QALRETQASY MMFLMEPHLQ DCLAQGGDTR SMEHITPDGN FQTNSICNCD QCLINNGLMP
401: H

Best Arabidopsis Sequence Match ( AT3G05770.2 )
(BLAST)

001: MSMKRSREES QGGGNHNRFV DEGPRLNLPL TKTPELINKI ESYLKVHYTC PHQQTENSSK TSTLPKSPEK LKAMNFPIST IKIGDCVFVA KNPDDIVAKF
101: YFAKKKLLWE FLFGEPVANM PRLKSKIEIQ WNDVSSFEES INSRDETGIL KIELKKRPTF FTETNPQAGK HTQWKQLDYD FTGDQASYYR RHTLHFPPGV
201: LQKNLEKLLT DSFWSKLYKV PFPVHESLYF DIGFENNNSS NGHSKTVGFN VNNGLQHDFS QGIGGVGEGE GNFSMANGGW QRNSYSHVNS LNYNTDNGLL
301: GMQAIPPSSQ VANEHYNNTQ NDYTGSQFGY RMNQDEIQKM QRIGKILESQ AYAVPDTQTK LTSSGMNNGP MYPPAGSYLE SRLLEEWYEH TRRFQQ

Arabidopsis Description

F10A16.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9L9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.