Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400007166 | Potato | nucleus | 61.92 | 54.48 |
| KRG90540 | Soybean | nucleus | 17.31 | 32.26 |
| KRH33824 | Soybean | nucleus | 17.5 | 32.04 |
| Bra018890.1-P | Field mustard | nucleus | 15.0 | 31.71 |
| CDY22822 | Canola | nucleus | 15.0 | 31.71 |
| CDY25203 | Canola | cytosol | 14.62 | 31.54 |
| KRH30889 | Soybean | cytosol | 13.65 | 28.86 |
| Bra001166.1-P | Field mustard | mitochondrion | 9.04 | 26.11 |
| AT1G54300.1 | Thale cress | cytosol, nucleus, vacuole | 15.58 | 25.8 |
| AT3G05770.1 | Thale cress | nucleus | 19.62 | 24.88 |
| CDY05199 | Canola | nucleus | 19.04 | 24.69 |
| Solyc06g068540.2.1 | Tomato | cytosol | 24.42 | 24.1 |
| Solyc03g117680.2.1 | Tomato | cytosol | 23.85 | 23.22 |
| GSMUA_Achr11P... | Banana | cytosol | 14.81 | 22.78 |
| Solyc07g005990.2.1 | Tomato | cytosol | 23.27 | 22.7 |
| CDX74132 | Canola | cytosol | 17.5 | 22.69 |
| CDY14664 | Canola | cytosol | 16.92 | 21.67 |
| VIT_14s0060g01240.t01 | Wine grape | cytosol | 24.42 | 20.39 |
| CDY27740 | Canola | plastid | 18.46 | 18.82 |
| Bra039411.1-P | Field mustard | plastid | 18.27 | 18.59 |
| Bra001165.1-P | Field mustard | mitochondrion | 5.19 | 11.74 |
Protein Annotations
| EnsemblPlants:Solyc01g100440.1.1 | EnsemblPlantsGene:Solyc01g100440.1 | PANTHER:PTHR33494 | PANTHER:PTHR33494:SF5 | SEG:seg | UniParc:UPI000276751F |
| UniProt:K4B178 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:90460286..90463314
Molecular Weight (calculated)
58657.3 Da
IEP (calculated)
6.169
GRAVY (calculated)
-0.775
Length
520 amino acids
Sequence
(BLAST)
(BLAST)
001: MVIRDDHEGL YGHDHQRLYG VDHQSSESHQ SSESMNDDVN GRLKFRRMSS ESDEDGLSKM FRTSPESISQ DTELIGLTLS KTPSFVNLLE SELSQVKMRK
101: NSNGSTRRVG RPSNSSRNKT NIEDFASVSE KLKASNFPAM KLTIGGWERV SKHEGDLIAK CYYAKRKLVW ELLDGPLKSK IEIQWSDIIA IRAIMPQGEQ
201: PGVLEIELNE PPTFHRESNP QPRKHTLWHQ TSDFTGGQAP IHRRHCVRFA PGVLDKHYEK LLRCDARLNE LSKKPFPSQL CPFFEQPDYN DQVSDFSIGN
301: DYGSQIFLNM HYPLHLLPSS SSSALLPNVR EPLRQFSSSY PVAGERMNGL WGGQTSNNMV NVAMGNQTIG MLPGGSTPEQ VDWYTTAQDD RAMYLENESI
401: GNGQVNHTVV NNLKNYLLEE NQVTSYNEPA FPYSLAEQHE NRSPVAATGD VHGLNPSYGQ MANNNYAAPN YEMAYMQTNT NWMFPQQTND QFSANYATAR
501: GGYPTQDGNQ EAQSGWKTIN
101: NSNGSTRRVG RPSNSSRNKT NIEDFASVSE KLKASNFPAM KLTIGGWERV SKHEGDLIAK CYYAKRKLVW ELLDGPLKSK IEIQWSDIIA IRAIMPQGEQ
201: PGVLEIELNE PPTFHRESNP QPRKHTLWHQ TSDFTGGQAP IHRRHCVRFA PGVLDKHYEK LLRCDARLNE LSKKPFPSQL CPFFEQPDYN DQVSDFSIGN
301: DYGSQIFLNM HYPLHLLPSS SSSALLPNVR EPLRQFSSSY PVAGERMNGL WGGQTSNNMV NVAMGNQTIG MLPGGSTPEQ VDWYTTAQDD RAMYLENESI
401: GNGQVNHTVV NNLKNYLLEE NQVTSYNEPA FPYSLAEQHE NRSPVAATGD VHGLNPSYGQ MANNNYAAPN YEMAYMQTNT NWMFPQQTND QFSANYATAR
501: GGYPTQDGNQ EAQSGWKTIN
001: MVEMMRSENH LRQASKHRNN NFPVKLEIIE DSLEEEHAPL NKRSKLWSNG TSVSKFSLLE EPSPLGLSLK KSPSFQELIE MKLSQSGDDS NSVKKESFGF
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
Arabidopsis Description
ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9ZUI1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.