CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039411.1-P	Field mustard	plastid	82.94	82.78
CDY05199	Canola	nucleus	57.25	72.82
CDY22822	Canola	nucleus	21.37	44.31
CDY25203	Canola	cytosol	20.78	43.98
CDY14664	Canola	cytosol	27.45	34.48
CDX74132	Canola	cytosol	26.47	33.67
AT1G54300.1	Thale cress	cytosol, nucleus, vacuole	20.0	32.48
AT3G05770.1	Thale cress	nucleus	23.92	29.76
KRG90540	Soybean	nucleus	16.27	29.75
KRH33824	Soybean	nucleus	14.9	26.76
KRH30889	Soybean	cytosol	12.55	26.02
CDX76839	Canola	nucleus	16.47	19.63
CDY34799	Canola	nucleus	16.47	19.58
GSMUA_Achr11P...	Banana	cytosol	12.35	18.64
Solyc01g100440.1.1	Tomato	nucleus	18.82	18.46
PGSC0003DMT400007166	Potato	nucleus	20.59	17.77
CDY28207	Canola	cytosol	5.88	17.65
CDY36470	Canola	nucleus	18.43	16.97
CDY23256	Canola	nucleus	17.84	16.88
CDX68693	Canola	cytosol	17.84	16.4
CDY28214	Canola	cytosol	17.65	15.73
CDY39241	Canola	cytosol	17.25	15.52
CDX72268	Canola	nucleus	17.06	15.37
VIT_14s0060g01240.t01	Wine grape	cytosol	16.86	13.8

Protein Annotations

EnsemblPlants:CDY27740	EnsemblPlantsGene:GSBRNA2T00038542001	PANTHER:PTHR33494	PANTHER:PTHR33494:SF5	ProteinID:CDY27740	ProteinID:CDY27740.1
SEG:seg	UniParc:UPI0004EEE6B9	UniProt:A0A078GMF3	MapMan:35.2	:	:

Description

BnaA05g31490DBnaA05g31490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GMF3]

Coordinates

chrLK032209:+:205114..208525

Molecular Weight (calculated)

57262.3 Da

IEP (calculated)

6.596

GRAVY (calculated)

-0.660

Length

510 amino acids

Sequence
(BLAST)

001: MLKLLTSTAY GGHHVNPIKS PLFKTLSQLT GSNRSSLELG CHAFCSSQSD YAADSKAAKS DSDTKSSSGV VSKVPKLDDY QTRVLEISHS MMNGWGEESQ
101: GGPCQITPEM ANNFPDEFHG ATPIWFGGLG GEDTLVQEGL YPPLNLTYTP TQEHFNKIES KFQEERQKQL YSTENTKALT THETPTTTEK LKAMNFEISK
201: ITIGEWTHKS VYPHDLIAKF YFAKKRLMWE ILDEDSKLKR KIEMQWSDVL SFRASFPPQN ETGTLEVELG KCPTFFLEVN PQRAKHTQWK QLDQDFTPGQ
301: SASKYRRHTL QISPGDLKMN LEKLVSAVSF WSKLAKVNFP TLPQSLYFDN GNSNNNGNSN LCPNGNCTTL GINGNHLYPQ GLGHVPVENV NFNMATELCP
401: NNQMNPIFQD DHQDETMSQL PGMQVTHPSS QHINMGRYII SGSHFNNPMI PDDRHTSNTG KLRGPYLQDI LAQEEVIQNM KCVRQFQTNG GYCNCNQCFN
501: NINGSLPPDS

Best Arabidopsis Sequence Match ( AT3G05770.2 )
(BLAST)

001: MSMKRSREES QGGGNHNRFV DEGPRLNLPL TKTPELINKI ESYLKVHYTC PHQQTENSSK TSTLPKSPEK LKAMNFPIST IKIGDCVFVA KNPDDIVAKF
101: YFAKKKLLWE FLFGEPVANM PRLKSKIEIQ WNDVSSFEES INSRDETGIL KIELKKRPTF FTETNPQAGK HTQWKQLDYD FTGDQASYYR RHTLHFPPGV
201: LQKNLEKLLT DSFWSKLYKV PFPVHESLYF DIGFENNNSS NGHSKTVGFN VNNGLQHDFS QGIGGVGEGE GNFSMANGGW QRNSYSHVNS LNYNTDNGLL
301: GMQAIPPSSQ VANEHYNNTQ NDYTGSQFGY RMNQDEIQKM QRIGKILESQ AYAVPDTQTK LTSSGMNNGP MYPPAGSYLE SRLLEEWYEH TRRFQQ

Arabidopsis Description

F10A16.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9L9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.