CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70999
CDX88799
CDY09133

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30780.1	CDX70999	AT5G22360.1	21798944
AT4G30780.1	CDX88799	AT5G22360.1	21798944
AT4G30780.1	CDY09133	AT5G22360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23256	Canola	nucleus	86.1	88.5
CDY39241	Canola	cytosol	80.32	78.48
CDY28214	Canola	cytosol	77.62	75.17
CDX68693	Canola	cytosol	74.55	74.41
CDX72268	Canola	nucleus	74.73	73.14
AT4G30780.1	Thale cress	nucleus	74.73	70.29
CDY34799	Canola	nucleus	46.75	60.37
CDX76839	Canola	nucleus	45.49	58.88
HORVU0Hr1G040420.1	Barley	cytosol	17.69	57.31
CDY28207	Canola	cytosol	17.33	56.47
KRH63129	Soybean	nucleus	47.83	49.72
KRH54987	Soybean	nucleus	46.21	48.03
VIT_11s0037g00810.t01	Wine grape	cytosol	46.57	46.65
Os06t0186600-02	Rice	cytosol	31.95	45.38
HORVU3Hr1G034290.1	Barley	cytosol	38.63	45.15
Solyc07g005990.2.1	Tomato	cytosol	42.24	43.9
KRH03001	Soybean	cytosol	38.99	43.81
PGSC0003DMT400029158	Potato	cytosol	41.88	43.53
Os02t0793800-00	Rice	cytosol	22.74	43.45
KRH72344	Soybean	cytosol	41.7	43.18
HORVU7Hr1G031130.2	Barley	nucleus	40.97	42.91
TraesCS7B01G055300.1	Wheat	cytosol	40.79	42.64
KXG19496	Sorghum	nucleus	40.97	42.35
GSMUA_Achr9P22760_001	Banana	nucleus	40.61	42.29
TraesCS7A01G151300.1	Wheat	nucleus	40.61	42.21
Zm00001d037085_P005	Maize	nucleus	40.97	42.12
TraesCS7D01G153200.1	Wheat	nucleus	40.43	42.03
Zm00001d045084_P002	Maize	cytosol	40.79	42.01
GSMUA_Achr4P05930_001	Banana	cytosol	39.35	40.75
GSMUA_Achr5P04640_001	Banana	nucleus	37.36	40.04
KRH58482	Soybean	mitochondrion	28.52	39.6
KXG31260	Sorghum	cytosol	35.2	39.08
GSMUA_Achr4P12730_001	Banana	mitochondrion	40.97	38.94
Zm00001d052047_P001	Maize	nucleus	33.39	37.91
GSMUA_Achr4P11470_001	Banana	plasma membrane	38.27	37.59
TraesCS6B01G387700.1	Wheat	mitochondrion	30.14	34.65
TraesCS6A01G354900.1	Wheat	mitochondrion	29.06	33.33
CDY22822	Canola	nucleus	14.44	32.52
TraesCS6D01G337100.2	Wheat	mitochondrion	29.42	32.34
CDY25203	Canola	cytosol	13.72	31.54
CDY14664	Canola	cytosol	16.97	23.15
CDY05199	Canola	nucleus	16.61	22.94
CDX74132	Canola	cytosol	15.88	21.95
CDY27740	Canola	plastid	16.97	18.43

Protein Annotations

EnsemblPlants:CDY36470	EnsemblPlantsGene:GSBRNA2T00062124001	PANTHER:PTHR33494	PANTHER:PTHR33494:SF1	ProteinID:CDY36470	ProteinID:CDY36470.1
UniParc:UPI0004EDE61A	UniProt:A0A078HDN4	MapMan:35.2	:	:	:

Description

BnaC03g67900DBnaC03g67900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HDN4]

Coordinates

chrLK032376:+:360938..363350

Molecular Weight (calculated)

60647.6 Da

IEP (calculated)

5.182

GRAVY (calculated)

-0.466

Length

554 amino acids

Sequence
(BLAST)

001: MVEMRPESDS AAKCRDELPV KLEIAEDGLE EEHGPLKKRS KLWSSSPMAL AEPSPLGLSL RKSPSLLDLI QMRLTQSGDP KAGGSGVVKQ ESKCITAGSN
101: LGPGSIEKLK ASNFPATVLK IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL ERGLKSKIEI QWSDIVGLKA NCPEKGPGTL TLLLSRQPLF FRETNPQPRK
201: HTLWQATSDF TSDGQASTYR KHFLQCAEGI MNKHLEKLVQ CDHRLLYLSR EPEIIMDSPF FDGRQSIFED PNDSKGYPFG NFNLSTGPSV SGTQNLASPV
301: GAQSSSERMY LSHEAPSPSS VIDARANEAL NSRNTTDCGQ MGGLRQSMSL SDFLAVLCDP KDTSDSSQVE QVAGLHQSMS VSDFLALLSD SGDIADSSQI
401: KVPGLQQSMS VSDFVGLLSD SAVGNHPEHM ENFDSMKQQL LSDNIQFDAP PDEKSLMPSV DSLFNLLYKD LNGAANSQLS AENSVGLKSE LSDLKGIVPD
501: NNNNRVLDPA SSSRPQGMLR KDSFSDLLLH LPRITSLPKF LSNISEEDGG AYNR

Best Arabidopsis Sequence Match ( AT4G30780.1 )
(BLAST)

001: MVEMRKSGGL RPESESAARC RDELPVKLEI AEDDLEEEHG PLNKRSRLWS PGTSSSTMAP AKYNPLDEPS PLGLSLKKSP SLLELIQMKI THCGDPKAAE
101: TLKAGALGSG LKRESKTIAA AASVGPTLAP GSIEKLKASN FPASLLKIGQ WEYKSRYEGD LVAKCYFAKH KLVWEVLEQG LKSKIEIQWS DIMALKANCP
201: EDGPGTLTLV LARQPLFFRE TNPQPRKHTL WQATSDFTDG QASMNRQHFL QCAQGIMNKH FEKLVQCDHR LFHLSRQPEI AIDSPYFDAR QSIFEDPSES
301: KGHPFGNLNL STGPSISGTQ NLASPVGAQS SSEHMYLSHE APSPSSVIDA RANEGIGGSE AVNSRNRTDC GQIEAPGIHQ SMSLSDFLAV LCDTKNTTDL
401: NLADDVDGLH QSMSVSDFVA YLSDSRNITD SDQIKVPGLH QSMSVSDFVG LLSDSAGGSH PEHMEKFEIM KQQLLSDNIQ FEAPDEKSLM PRVNSLFNLL
501: YKDPNVAANS QLNTEMSVGL KSEPKGIVSD NNNNNNNNNR VLDTASSSKP QGMLRKDSFS DLLLHLPRIT SLPKFLSNIS EEDGDAYNR

Arabidopsis Description

ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9SUG8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.