CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES13179
KXG32415

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24100.1	KXG32415	AT1G73720.1	21798944
AT4G30780.1	EES13179	AT5G22360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045084_P002	Maize	cytosol	91.98	91.64
Zm00001d037085_P005	Maize	nucleus	89.93	89.42
Os06t0186600-02	Rice	cytosol	58.02	79.74
HORVU3Hr1G034290.1	Barley	cytosol	66.6	75.32
HORVU7Hr1G031130.2	Barley	nucleus	73.69	74.67
TraesCS7A01G151300.1	Wheat	nucleus	74.07	74.48
TraesCS7B01G055300.1	Wheat	cytosol	72.76	73.58
TraesCS7D01G153200.1	Wheat	nucleus	73.13	73.55
KXG31260	Sorghum	cytosol	53.92	57.92
GSMUA_Achr5P04640_001	Banana	nucleus	51.68	53.58
VIT_11s0037g00810.t01	Wine grape	cytosol	51.31	49.73
PGSC0003DMT400036859	Potato	cytosol	47.57	49.32
Solyc03g117680.2.1	Tomato	cytosol	48.32	48.5
KRH63129	Soybean	nucleus	47.95	48.22
PGSC0003DMT400029158	Potato	cytosol	46.83	47.09
Solyc07g005990.2.1	Tomato	cytosol	46.64	46.9
Bra039229.1-P	Field mustard	nucleus	37.5	46.85
CDY34799	Canola	nucleus	37.5	46.85
CDX76839	Canola	nucleus	37.31	46.73
KRH54987	Soybean	nucleus	46.46	46.72
PGSC0003DMT400074432	Potato	nucleus	44.03	46.55
VIT_09s0018g01680.t01	Wine grape	cytosol	45.52	45.95
AT2G24100.1	Thale cress	nucleus	39.93	45.92
KRH03001	Soybean	cytosol	42.16	45.84
Solyc06g068540.2.1	Tomato	cytosol	43.84	44.59
KRH72344	Soybean	cytosol	44.03	44.11
KRH58482	Soybean	mitochondrion	31.34	42.11
CDY23256	Canola	nucleus	41.98	41.74
CDX68693	Canola	cytosol	42.72	41.26
Bra024044.1-P	Field mustard	nucleus	43.47	41.02
CDY36470	Canola	nucleus	42.35	40.97
CDY39241	Canola	cytosol	43.1	40.74
Bra010274.1-P	Field mustard	cytosol	42.16	40.65
CDY28214	Canola	cytosol	43.28	40.56
Bra011221.1-P	Field mustard	nucleus	42.91	40.42
KRH44588	Soybean	cytosol	45.34	40.23
CDY28207	Canola	cytosol	12.69	40.0
Bra011214.1-P	Field mustard	cytosol	12.69	40.0
KRH47309	Soybean	nucleus	44.59	39.9
CDX72268	Canola	nucleus	41.98	39.75
AT4G30780.1	Thale cress	nucleus	43.47	39.56
KRH28821	Soybean	peroxisome	26.68	33.49

Protein Annotations

EnsemblPlants:KXG19496	EnsemblPlantsGene:SORBI_3010G067700	PANTHER:PTHR33494	PANTHER:PTHR33494:SF1	ProteinID:KXG19496	ProteinID:KXG19496.1
SEG:seg	UniParc:UPI0007F1F07F	UniProt:A0A194YIS6	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr10:-:5433815..5438197

Molecular Weight (calculated)

57869.2 Da

IEP (calculated)

5.095

GRAVY (calculated)

-0.478

Length

536 amino acids

Sequence
(BLAST)

001: MVHLPSSGKR PAEPAMAPER HAAAVKLEVE ELGADERGPL SKRAKAAQLM PPTPPQPQQD MYHNVLDEPS PLGLRLKKSP SLLDLIQMRL SQASNAGESS
101: MDNSGSEPSK KKDNKSGASA AGERLKASNF PANVLKIGSW EYVSRYEGDL VAKCYFAKHK LVWEVLEGGL KSKIEIQWSD ITALKATCPE NGQGTLDVAL
201: ARPPLFFKET DPQPRKHTLW QATSDFTGGQ ASMHRRHFLQ CPSTLLSKNF EKLIQCDQRL YQLSQQPEIA LETAVFEPRC SIFEDPVESK CAGFTNLKDE
301: HEALPGYSGS VSPCAGSSIS AKNENNDSIG MPAEYLPQAV GTGIFTGVGA VGVQSVGRNV NGAAPEFNIP HWWSQLKVPG LRPSMSVDDL VSHLGNCISE
401: QITSGNPALA NNEVPTKETL EGIAQYLLGD TQGPPVSASD ERSLMARVDS LCCLIQKDTV PVAKPKPEPN DSDSIGAEAS DGSDEEFSSA PTGKPTDATN
501: PPAMSRKDSF GELLTNLPRI ASLPQFLFKI PEDTEN

Best Arabidopsis Sequence Match ( AT4G30780.1 )
(BLAST)

001: MVEMRKSGGL RPESESAARC RDELPVKLEI AEDDLEEEHG PLNKRSRLWS PGTSSSTMAP AKYNPLDEPS PLGLSLKKSP SLLELIQMKI THCGDPKAAE
101: TLKAGALGSG LKRESKTIAA AASVGPTLAP GSIEKLKASN FPASLLKIGQ WEYKSRYEGD LVAKCYFAKH KLVWEVLEQG LKSKIEIQWS DIMALKANCP
201: EDGPGTLTLV LARQPLFFRE TNPQPRKHTL WQATSDFTDG QASMNRQHFL QCAQGIMNKH FEKLVQCDHR LFHLSRQPEI AIDSPYFDAR QSIFEDPSES
301: KGHPFGNLNL STGPSISGTQ NLASPVGAQS SSEHMYLSHE APSPSSVIDA RANEGIGGSE AVNSRNRTDC GQIEAPGIHQ SMSLSDFLAV LCDTKNTTDL
401: NLADDVDGLH QSMSVSDFVA YLSDSRNITD SDQIKVPGLH QSMSVSDFVG LLSDSAGGSH PEHMEKFEIM KQQLLSDNIQ FEAPDEKSLM PRVNSLFNLL
501: YKDPNVAANS QLNTEMSVGL KSEPKGIVSD NNNNNNNNNR VLDTASSSKP QGMLRKDSFS DLLLHLPRIT SLPKFLSNIS EEDGDAYNR

Arabidopsis Description

ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9SUG8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.