Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra006623.1-P | |
| Bra020187.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G30780.1 | Bra006623.1-P | AT5G22360.1 | 21798944 |
| AT4G30780.1 | Bra020187.1-P | AT5G22360.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28207 | Canola | cytosol | 100.0 | 100.0 |
| Bra011221.1-P | Field mustard | nucleus | 83.53 | 24.96 |
| HORVU0Hr1G040420.1 | Barley | cytosol | 24.71 | 24.56 |
| Bra024044.1-P | Field mustard | nucleus | 67.65 | 20.25 |
| AT4G30780.1 | Thale cress | nucleus | 63.53 | 18.34 |
| Bra039229.1-P | Field mustard | nucleus | 45.88 | 18.18 |
| Bra010274.1-P | Field mustard | cytosol | 59.41 | 18.17 |
| KRH03001 | Soybean | cytosol | 44.12 | 15.21 |
| KRH63129 | Soybean | nucleus | 45.29 | 14.45 |
| KRH54987 | Soybean | nucleus | 45.29 | 14.45 |
| KRH72344 | Soybean | cytosol | 45.29 | 14.39 |
| VIT_11s0037g00810.t01 | Wine grape | cytosol | 45.29 | 13.92 |
| Bra001166.1-P | Field mustard | mitochondrion | 14.71 | 13.89 |
| GSMUA_Achr5P04640_001 | Banana | nucleus | 41.18 | 13.54 |
| GSMUA_Achr9P22760_001 | Banana | nucleus | 40.59 | 12.97 |
| TraesCS7B01G055300.1 | Wheat | cytosol | 40.0 | 12.83 |
| TraesCS7A01G151300.1 | Wheat | nucleus | 40.0 | 12.76 |
| KXG19496 | Sorghum | nucleus | 40.0 | 12.69 |
| Zm00001d037085_P005 | Maize | nucleus | 40.0 | 12.62 |
| GSMUA_Achr4P11470_001 | Banana | plasma membrane | 41.76 | 12.59 |
| HORVU7Hr1G031130.2 | Barley | nucleus | 38.82 | 12.48 |
| TraesCS7D01G153200.1 | Wheat | nucleus | 38.82 | 12.38 |
| Solyc07g005990.2.1 | Tomato | cytosol | 38.82 | 12.38 |
| Zm00001d045084_P002 | Maize | cytosol | 38.82 | 12.27 |
| PGSC0003DMT400029158 | Potato | cytosol | 38.24 | 12.2 |
| Bra018890.1-P | Field mustard | nucleus | 17.65 | 12.2 |
| GSMUA_Achr4P05930_001 | Banana | cytosol | 37.06 | 11.78 |
| GSMUA_Achr4P12730_001 | Banana | mitochondrion | 39.41 | 11.49 |
| HORVU3Hr1G034290.1 | Barley | cytosol | 31.76 | 11.39 |
| Zm00001d052047_P001 | Maize | nucleus | 32.35 | 11.27 |
| KXG31260 | Sorghum | cytosol | 31.18 | 10.62 |
| Os02t0793800-00 | Rice | cytosol | 16.47 | 9.66 |
| TraesCS6B01G387700.1 | Wheat | mitochondrion | 25.88 | 9.13 |
| TraesCS6A01G354900.1 | Wheat | mitochondrion | 25.88 | 9.11 |
| TraesCS6D01G337100.2 | Wheat | mitochondrion | 24.71 | 8.33 |
| Bra039411.1-P | Field mustard | plastid | 20.59 | 6.85 |
| KRH58482 | Soybean | mitochondrion | 13.53 | 5.76 |
| Os06t0186600-02 | Rice | cytosol | 7.06 | 3.08 |
| Bra001165.1-P | Field mustard | mitochondrion | 0.0 | 0.0 |
Protein Annotations
Description
AT4G30780 (E=4e-032) | unknown protein
Coordinates
chrA01:-:3288375..3289140
Molecular Weight (calculated)
18203.9 Da
IEP (calculated)
9.673
GRAVY (calculated)
-0.194
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKSGVTRPD SELASKSRDD LPVKLEIAED DLEEAHGPLN KRYKLWSSGT SSSSMAPAKY NPLDEPSPLG LSLRKSPSLS DLIQMRLTQK AVDAVGSGVK
101: KESKCITAAA SAGATLAPGS IEKLKASNFA ATVLKIGKWE TMLITLLYSV FARYALRGIS TVDVLESGFT
101: KESKCITAAA SAGATLAPGS IEKLKASNFA ATVLKIGKWE TMLITLLYSV FARYALRGIS TVDVLESGFT
001: MVEMRKSGGL RPESESAARC RDELPVKLEI AEDDLEEEHG PLNKRSRLWS PGTSSSTMAP AKYNPLDEPS PLGLSLKKSP SLLELIQMKI THCGDPKAAE
101: TLKAGALGSG LKRESKTIAA AASVGPTLAP GSIEKLKASN FPASLLKIGQ WEYKSRYEGD LVAKCYFAKH KLVWEVLEQG LKSKIEIQWS DIMALKANCP
201: EDGPGTLTLV LARQPLFFRE TNPQPRKHTL WQATSDFTDG QASMNRQHFL QCAQGIMNKH FEKLVQCDHR LFHLSRQPEI AIDSPYFDAR QSIFEDPSES
301: KGHPFGNLNL STGPSISGTQ NLASPVGAQS SSEHMYLSHE APSPSSVIDA RANEGIGGSE AVNSRNRTDC GQIEAPGIHQ SMSLSDFLAV LCDTKNTTDL
401: NLADDVDGLH QSMSVSDFVA YLSDSRNITD SDQIKVPGLH QSMSVSDFVG LLSDSAGGSH PEHMEKFEIM KQQLLSDNIQ FEAPDEKSLM PRVNSLFNLL
501: YKDPNVAANS QLNTEMSVGL KSEPKGIVSD NNNNNNNNNR VLDTASSSKP QGMLRKDSFS DLLLHLPRIT SLPKFLSNIS EEDGDAYNR
101: TLKAGALGSG LKRESKTIAA AASVGPTLAP GSIEKLKASN FPASLLKIGQ WEYKSRYEGD LVAKCYFAKH KLVWEVLEQG LKSKIEIQWS DIMALKANCP
201: EDGPGTLTLV LARQPLFFRE TNPQPRKHTL WQATSDFTDG QASMNRQHFL QCAQGIMNKH FEKLVQCDHR LFHLSRQPEI AIDSPYFDAR QSIFEDPSES
301: KGHPFGNLNL STGPSISGTQ NLASPVGAQS SSEHMYLSHE APSPSSVIDA RANEGIGGSE AVNSRNRTDC GQIEAPGIHQ SMSLSDFLAV LCDTKNTTDL
401: NLADDVDGLH QSMSVSDFVA YLSDSRNITD SDQIKVPGLH QSMSVSDFVG LLSDSAGGSH PEHMEKFEIM KQQLLSDNIQ FEAPDEKSLM PRVNSLFNLL
501: YKDPNVAANS QLNTEMSVGL KSEPKGIVSD NNNNNNNNNR VLDTASSSKP QGMLRKDSFS DLLLHLPRIT SLPKFLSNIS EEDGDAYNR
Arabidopsis Description
ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9SUG8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.