Factsheet for VIT_11s0037g00810.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0080g00800.t01
VIT_17s0000g08930.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24100.1	VIT_17s0000g08930.t01	AT1G73720.1	21798944
AT4G30780.1	VIT_06s0080g00800.t01	AT5G22360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54987	Soybean	nucleus	58.59	60.79
KRH63129	Soybean	nucleus	58.05	60.23
HORVU0Hr1G040420.1	Barley	cytosol	18.44	59.65
Bra039229.1-P	Field mustard	nucleus	45.93	59.21
CDX76839	Canola	nucleus	45.75	59.11
CDY34799	Canola	nucleus	45.57	58.74
Solyc07g005990.2.1	Tomato	cytosol	56.42	58.54
PGSC0003DMT400029158	Potato	cytosol	56.24	58.35
AT2G24100.1	Thale cress	nucleus	48.1	57.08
GSMUA_Achr9P22760_001	Banana	nucleus	54.07	56.2
KRH72344	Soybean	cytosol	54.25	56.07
KRH03001	Soybean	cytosol	49.37	55.38
GSMUA_Achr4P05930_001	Banana	cytosol	53.35	55.14
Os06t0186600-02	Rice	cytosol	38.88	55.13
VIT_09s0018g01680.t01	Wine grape	cytosol	52.08	54.24
GSMUA_Achr5P04640_001	Banana	nucleus	50.09	53.58
HORVU3Hr1G034290.1	Barley	cytosol	45.21	52.74
KRH58482	Soybean	mitochondrion	37.97	52.63
Zm00001d045084_P002	Maize	cytosol	50.99	52.42
Zm00001d037085_P005	Maize	nucleus	50.45	51.76
KXG19496	Sorghum	nucleus	49.73	51.31
HORVU7Hr1G031130.2	Barley	nucleus	48.28	50.47
GSMUA_Achr4P12730_001	Banana	mitochondrion	52.8	50.09
TraesCS7B01G055300.1	Wheat	cytosol	47.56	49.62
TraesCS7A01G151300.1	Wheat	nucleus	47.74	49.53
TraesCS7D01G153200.1	Wheat	nucleus	47.56	49.34
CDX68693	Canola	cytosol	49.19	49.01
CDY23256	Canola	nucleus	47.2	48.42
Bra024044.1-P	Field mustard	nucleus	49.55	48.24
Os02t0793800-00	Rice	cytosol	25.14	47.93
CDY39241	Canola	cytosol	49.01	47.8
CDY28214	Canola	cytosol	49.01	47.38
AT4G30780.1	Thale cress	nucleus	50.45	47.37
Bra010274.1-P	Field mustard	cytosol	47.56	47.3
CDX72268	Canola	nucleus	48.28	47.17
Bra011221.1-P	Field mustard	nucleus	48.46	47.1
CDY36470	Canola	nucleus	46.65	46.57
KXG31260	Sorghum	cytosol	41.41	45.89
CDY28207	Canola	cytosol	13.92	45.29
Bra011214.1-P	Field mustard	cytosol	13.92	45.29
GSMUA_Achr4P11470_001	Banana	plasma membrane	45.93	45.04
Zm00001d052047_P001	Maize	nucleus	38.52	43.65
TraesCS6B01G387700.1	Wheat	mitochondrion	33.63	38.59
TraesCS6A01G354900.1	Wheat	mitochondrion	33.09	37.89
TraesCS6D01G337100.2	Wheat	mitochondrion	32.73	35.91
VIT_14s0060g01240.t01	Wine grape	cytosol	25.86	22.95

Protein Annotations

ArrayExpress:VIT_11s0037g00810	EMBL:FN596499	EnsemblPlants:VIT_11s0037g00810.t01	EnsemblPlantsGene:VIT_11s0037g00810	EntrezGene:100251901	EntrezGene:LOC100251901
PANTHER:PTHR33494	PANTHER:PTHR33494:SF1	ProteinID:CCB59786	ProteinID:CCB59786.1	RefSeq:XP_002274694	RefSeq:XP_002274694.1
TIGR:TC54799	TIGR:TC59021	unigene:Vvi.6737	UniParc:UPI0001984422	UniProt:F6HYM2	wikigene:100251901
wikigene:LOC100251901	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr11:-:9369752..9376069

Molecular Weight (calculated)

61670.6 Da

IEP (calculated)

5.077

GRAVY (calculated)

-0.679

Length

553 amino acids

Sequence
(BLAST)

001: MVQLMKSGSL RPERETTPCR DKLPVKLEIE DSLEEEHGPF NKRSKPSTSY QQWSTGNNAY PIPPSQYNPL DEPSPLGLRL RKSPSLLDLI QMRLSQGNPS
101: NVGCAPNKGP NPGDKKDPGK GNMALGTDKL KASNFPASLL RIGRWEYASR YEGDLVAKCY FAKHKLVWEV LEGGLKSKIE IQWSDIMALK ANCPDDGPGT
201: LNVVLARQPL FFRETNPQPR KHTLWQATAD FTDGQASIHR QHFLQCPQGL LNKHFEKLIQ CDMRLNFLSR QPEIVLDSPY FERVSVFEDP DESKVEGFDQ
301: LESVQGSTIS GFQDVASPTA AQSSSLKIEP RDPVGLASEN LSRESPSPSS VMDTRAMEGS RNCETDDLKR QRNWEQLKVP GLHPSISMSD LMNHIENRIS
401: EQMTSGNPAL SEEGVECQGI LEDIAQYLLS DSHFTAASDE KSLMSRVNSL CCLLQKDPGS VQNLQMNGEG CFEELDEKKD VQLNHTSESV HENKAPGDIT
501: VPEGDSKDVT GYKQAPAMSR KDSFGDLLLH LPRITSLPKF LFNISEDDEN QAR

Best Arabidopsis Sequence Match ( AT4G30780.1 )
(BLAST)

001: MVEMRKSGGL RPESESAARC RDELPVKLEI AEDDLEEEHG PLNKRSRLWS PGTSSSTMAP AKYNPLDEPS PLGLSLKKSP SLLELIQMKI THCGDPKAAE
101: TLKAGALGSG LKRESKTIAA AASVGPTLAP GSIEKLKASN FPASLLKIGQ WEYKSRYEGD LVAKCYFAKH KLVWEVLEQG LKSKIEIQWS DIMALKANCP
201: EDGPGTLTLV LARQPLFFRE TNPQPRKHTL WQATSDFTDG QASMNRQHFL QCAQGIMNKH FEKLVQCDHR LFHLSRQPEI AIDSPYFDAR QSIFEDPSES
301: KGHPFGNLNL STGPSISGTQ NLASPVGAQS SSEHMYLSHE APSPSSVIDA RANEGIGGSE AVNSRNRTDC GQIEAPGIHQ SMSLSDFLAV LCDTKNTTDL
401: NLADDVDGLH QSMSVSDFVA YLSDSRNITD SDQIKVPGLH QSMSVSDFVG LLSDSAGGSH PEHMEKFEIM KQQLLSDNIQ FEAPDEKSLM PRVNSLFNLL
501: YKDPNVAANS QLNTEMSVGL KSEPKGIVSD NNNNNNNNNR VLDTASSSKP QGMLRKDSFS DLLLHLPRIT SLPKFLSNIS EEDGDAYNR

Arabidopsis Description

ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9SUG8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.