Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- plastid 2
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
VIT_03s0038g04360.t01 | |
VIT_11s0037g00810.t01 | |
VIT_19s0085g00030.t01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G22360.1 | VIT_19s0085g00030.t01 | AT1G16500.1 | 21798944 |
AT5G22360.1 | VIT_03s0038g04360.t01 | AT1G22920.1 | 21798944 |
AT5G22360.1 | VIT_11s0037g00810.t01 | AT2G24100.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH25265 | Soybean | plasma membrane | 90.45 | 90.45 |
KRH30399 | Soybean | endoplasmic reticulum | 89.55 | 89.55 |
AT5G22360.1 | Thale cress | plasma membrane | 89.09 | 88.69 |
Bra006623.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 86.82 | 86.43 |
CDX70999 | Canola | endoplasmic reticulum | 86.82 | 86.43 |
CDX88799 | Canola | plasma membrane | 86.82 | 86.43 |
Zm00001d052756_P001 | Maize | endoplasmic reticulum | 75.45 | 86.01 |
Bra020187.1-P | Field mustard | endoplasmic reticulum | 85.45 | 85.07 |
CDY09133 | Canola | endoplasmic reticulum | 85.45 | 85.07 |
GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane, plastid | 83.18 | 83.94 |
EES13179 | Sorghum | endoplasmic reticulum, plasma membrane | 84.55 | 83.78 |
GSMUA_Achr11P... | Banana | endoplasmic reticulum | 82.73 | 83.49 |
TraesCS7A01G328000.1 | Wheat | plasma membrane | 83.64 | 82.88 |
TraesCS7B01G228700.1 | Wheat | plasma membrane | 83.64 | 82.88 |
TraesCS7D01G324800.1 | Wheat | plasma membrane | 83.64 | 82.88 |
HORVU7Hr1G078500.1 | Barley | plasma membrane | 83.18 | 82.43 |
Os10t0154000-01 | Rice | plasma membrane | 82.73 | 80.53 |
PGSC0003DMT400015063 | Potato | plastid | 79.55 | 76.75 |
Solyc06g074250.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 89.55 | 75.48 |
VIT_04s0008g05650.t01 | Wine grape | extracellular | 57.27 | 57.27 |
VIT_07s0005g05790.t01 | Wine grape | cytosol, vacuole | 37.73 | 37.9 |
VIT_05s0136g00290.t01 | Wine grape | extracellular | 35.91 | 35.91 |
VIT_01s0011g01660.t01 | Wine grape | endoplasmic reticulum | 35.91 | 35.75 |
VIT_05s0020g01430.t01 | Wine grape | cytosol | 33.18 | 33.03 |
VIT_13s0101g00410.t01 | Wine grape | endoplasmic reticulum, golgi | 34.55 | 31.8 |
Protein Annotations
Gene3D:1.20.5.110 | EntrezGene:100241605 | wikigene:100241605 | MapMan:22.7.5.1 | Gene3D:3.30.450.50 | EMBL:AM436644 |
ProteinID:CAN64940 | ProteinID:CAN64940.1 | ProteinID:CBI28291 | ProteinID:CBI28291.3 | UniProt:D7TCR8 | EMBL:FN595757 |
GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006887 | GO:GO:0006906 |
GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 |
GO:GO:0031201 | InterPro:IPR001388 | InterPro:IPR010908 | EntrezGene:LOC100241605 | wikigene:LOC100241605 | InterPro:Longin-like_dom_sf |
InterPro:Longin_dom | PFAM:PF00957 | PFAM:PF13774 | PRINTS:PR00219 | ScanProsite:PS00417 | PFscan:PS50859 |
PFscan:PS50892 | PANTHER:PTHR21136 | PANTHER:PTHR21136:SF165 | SMART:SM01270 | SUPFAM:SSF58038 | SUPFAM:SSF64356 |
InterPro:Synaptobrevin | TIGR:TC59944 | TIGR:TC69521 | TMHMM:TMhelix | UniParc:UPI0001985B15 | ArrayExpress:VIT_06s0080g00800 |
EnsemblPlantsGene:VIT_06s0080g00800 | EnsemblPlants:VIT_06s0080g00800.t01 | unigene:Vvi.1477 | RefSeq:XP_002273961 | RefSeq:XP_002273961.1 | SEG:seg |
Description
No Description!
Coordinates
chr6:+:20803183..20813051
Molecular Weight (calculated)
24900.6 Da
IEP (calculated)
9.238
GRAVY (calculated)
0.106
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIVYALVAR GTVVLSEFSA VSGNTGAVAR RILEKLPAEA DSRLCFSQDR YIFHILRADG LAFLCMANDT FGRRIPFSYL EDIQMRFMKN YGKVAHYAPA
101: YAMNDEFSRV LHQQMEFFSS NPSADTLNRV RGEVGEIRTI MVENIEKILE RGDRIELLVD KTATMQDSSF HFKKQSKRLR RALWMKNAKL LALLTCLIVV
201: LLYIIIAACC GGITLPSCRS
101: YAMNDEFSRV LHQQMEFFSS NPSADTLNRV RGEVGEIRTI MVENIEKILE RGDRIELLVD KTATMQDSSF HFKKQSKRLR RALWMKNAKL LALLTCLIVV
201: LLYIIIAACC GGITLPSCRS
001: MAIVYAVVAR GTVVLAEFSA VTGNTGAVVR RILEKLSPEI SDERLCFSQD RYIFHILRSD GLTFLCMAND TFGRRVPFSY LEEIHMRFMK NYGKVAHNAP
101: AYAMNDEFSR VLHQQMEFFS SNPSVDTLNR VRGEVSEIRS VMVENIEKIM ERGDRIELLV DKTATMQDSS FHFRKQSKRL RRALWMKNAK LLVLLTCLIV
201: FLLYIIIASF CGGITLPSCR S
101: AYAMNDEFSR VLHQQMEFFS SNPSVDTLNR VRGEVSEIRS VMVENIEKIM ERGDRIELLV DKTATMQDSS FHFRKQSKRL RRALWMKNAK LLVLLTCLIV
201: FLLYIIIASF CGGITLPSCR S
Arabidopsis Description
VAMP714Vesicle-associated membrane protein 714 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMR5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.