Factsheet for VIT_05s0020g01430.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50864	Soybean	cytosol	88.24	88.24
KRH12042	Soybean	cytosol	87.78	87.78
KRH02246	Soybean	cytosol	87.33	87.33
KRH37118	Soybean	cytosol	86.88	86.1
Solyc01g066940.2.1	Tomato	cytosol	82.81	82.81
AT4G15780.1	Thale cress	cytosol	68.33	82.07
Bra033511.1-P	Field mustard	cytosol	82.35	81.98
CDY22900	Canola	cytosol, plasma membrane, plastid	81.9	81.53
CDY44179	Canola	cytosol	81.9	81.53
GSMUA_Achr9P30970_001	Banana	cytosol	76.47	74.12
VIT_07s0005g05790.t01	Wine grape	cytosol, vacuole	70.59	71.23
VIT_05s0136g00290.t01	Wine grape	extracellular	69.68	70.0
VIT_01s0011g01660.t01	Wine grape	endoplasmic reticulum	65.61	65.61
Bra038066.1-P	Field mustard	cytosol	59.73	65.35
CDY22757	Canola	cytosol	59.73	65.35
Os07t0249200-01	Rice	cytosol	72.4	64.52
PGSC0003DMT400029447	Potato	cytosol	83.71	62.5
KXG34786	Sorghum	cytosol	70.14	62.25
Zm00001d005468_P001	Maize	cytosol	69.23	60.47
Zm00001d019298_P002	Maize	cytosol	68.78	60.08
TraesCS5D01G003800.1	Wheat	cytosol	57.47	54.98
TraesCS5A01G003100.1	Wheat	cytosol	57.47	54.74
VIT_13s0101g00410.t01	Wine grape	endoplasmic reticulum, golgi	55.66	51.46
VIT_06s0080g00800.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	33.03	33.18
VIT_04s0008g05650.t01	Wine grape	extracellular	32.13	32.27

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100254439	wikigene:100254439	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50
ProteinID:CBI26070	ProteinID:CBI26070.3	UniProt:D7T6E9	EMBL:FN595749	GO:GO:0000149	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006887	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	InterPro:IPR001388
InterPro:IPR010908	EntrezGene:LOC100254439	wikigene:LOC100254439	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFAM:PF00957
PFAM:PF13774	PRINTS:PR00219	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF72
SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin	TIGR:TC60238	TMHMM:TMhelix
UniParc:UPI00015C7A1B	ArrayExpress:VIT_05s0020g01430	EnsemblPlantsGene:VIT_05s0020g01430	EnsemblPlants:VIT_05s0020g01430.t01	unigene:Vvi.12580	RefSeq:XP_002273101
RefSeq:XP_002273101.1	RefSeq:XP_002273167	RefSeq:XP_002273167.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:-:3147072..3150640

Molecular Weight (calculated)

25181.7 Da

IEP (calculated)

9.140

GRAVY (calculated)

-0.181

Length

221 amino acids

Sequence
(BLAST)

001: MSQESFIYSF VARGTMVLAE YTEFTGNFPA IATQCLQRLP SANNKFTYNC DHHTFNFLVE DGYAYCVVAK ESVGKQVSIA FLERMKADFK KRYGGGKADT
101: ATAKSLNKDF GPIMKEHMQY IIDHAEEIEK LLKVKAQVSE VKSIMLENID KTLERGENLT ILADKTEDLR SQAQQFKKQG SQVRRKMWFQ NMKIKLVVLG
201: ILLILALVIW VSICHGFNCS K

Best Arabidopsis Sequence Match ( AT4G15780.1 )
(BLAST)

001: MGQESFIYSF VARGTMILAE YTEFTGNFPS IAAQCLQKLP SSSNSKFTYN CDHHTFNFLV EDGYAYCVVA KDSLSKQISI AFLERVKADF KKRYGGGKAS
101: TAIAKSLNKE FGPVMKEHMN YIVDHAEEIE KLIKVKAQVS EVKSIMLENI DKAIDRGENL TVLTDKTENL RSQAREYKKT KGHR

Arabidopsis Description

ATVAMP724vesicle-associated membrane protein 724 [Source:TAIR;Acc:AT4G15780]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.