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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane, plastid
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra033511.1-P Field mustard cytosol 99.1 99.1
CDY44179 Canola cytosol 99.1 99.1
AT4G15780.1 Thale cress cytosol 79.28 95.65
KRH50864 Soybean cytosol 89.64 90.05
KRH02246 Soybean cytosol 88.74 89.14
KRH12042 Soybean cytosol 88.29 88.69
KRH37118 Soybean cytosol 86.94 86.55
Solyc01g066940.2.1 Tomato cytosol 82.88 83.26
VIT_05s0020g01430.t01 Wine grape cytosol 81.53 81.9
CDY22757 Canola cytosol 71.17 78.22
CDY59643 Canola extracellular 24.32 72.97
CDY12188 Canola cytosol 71.17 71.82
CDX84731 Canola cytosol 70.27 70.91
CDY15521 Canola endoplasmic reticulum 69.37 70.32
CDX86608 Canola endoplasmic reticulum 69.37 70.32
GSMUA_Achr9P30970_001 Banana cytosol 72.07 70.18
CDY18254 Canola endoplasmic reticulum 69.37 70.0
CDX89793 Canola endoplasmic reticulum 69.37 70.0
CDX79510 Canola endoplasmic reticulum 69.82 69.82
CDY19154 Canola cytosol 68.92 69.55
CDY19450 Canola cytosol, extracellular 69.82 69.51
CDY17139 Canola cytosol, extracellular 69.82 69.51
CDX84702 Canola endoplasmic reticulum 69.37 69.37
CDY06150 Canola cytosol 68.47 69.09
CDY10053 Canola endoplasmic reticulum 68.47 69.09
CDY48531 Canola cytosol 67.57 68.18
CDY37751 Canola endoplasmic reticulum, extracellular, plasma membrane 63.96 64.84
CDY19156 Canola cytosol 41.44 63.89
CDX79465 Canola extracellular 24.32 62.79
CDX79466 Canola endoplasmic reticulum 49.55 62.5
PGSC0003DMT400029447 Potato cytosol 82.43 61.82
CDY59642 Canola endoplasmic reticulum 49.55 61.8
Os07t0249200-01 Rice cytosol 68.02 60.89
KXG34786 Sorghum cytosol 66.67 59.44
CDY23768 Canola endoplasmic reticulum, extracellular, plasma membrane 44.14 58.68
Zm00001d005468_P001 Maize cytosol 66.22 58.1
Zm00001d019298_P002 Maize cytosol 63.96 56.13
CDY48527 Canola cytosol 18.02 55.56
CDY23767 Canola extracellular 25.68 53.27
TraesCS5D01G003800.1 Wheat cytosol 55.41 53.25
TraesCS5A01G003100.1 Wheat cytosol 55.41 53.02
CDX67594 Canola cytosol 52.25 48.13
CDX76153 Canola cytosol 52.25 47.93
CDY07551 Canola cytosol 51.8 47.92
CDX78228 Canola cytosol, plasma membrane 51.35 47.5
CDX73490 Canola plasma membrane 51.35 47.3
CDY13199 Canola plasma membrane 41.44 46.23
CDY61387 Canola endoplasmic reticulum, plasma membrane 34.23 34.7
CDX75224 Canola endoplasmic reticulum, plasma membrane 33.78 34.09
CDX69781 Canola plasma membrane 33.33 33.48
CDX70999 Canola endoplasmic reticulum 33.33 33.48
CDX97084 Canola plasma membrane 33.33 33.48
CDX68821 Canola endoplasmic reticulum, plasma membrane 32.88 33.18
CDX88799 Canola plasma membrane 32.43 32.58
CDY09133 Canola endoplasmic reticulum 31.98 32.13
Protein Annotations
Gene3D:1.20.5.110MapMan:13.4.2.3.4MapMan:22.7.5.1Gene3D:3.30.450.50GO:A0A078G8Z4UniProt:A0A078G8Z4
EnsemblPlants:CDY22900ProteinID:CDY22900ProteinID:CDY22900.1ncoils:CoilGO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0016192EnsemblPlantsGene:GSBRNA2T00021268001InterPro:IPR001388
InterPro:IPR010908InterPro:Longin-like_dom_sfInterPro:Longin_domPFAM:PF00957PFAM:PF13774PRINTS:PR00219
ScanProsite:PS00417PFscan:PS50859PFscan:PS50892PANTHER:PTHR21136PANTHER:PTHR21136:SF72SMART:SM01270
SUPFAM:SSF58038SUPFAM:SSF64356InterPro:SynaptobrevinTMHMM:TMhelixUniParc:UPI0004EDF698SEG:seg
Description
BnaA01g18380DBnaA01g18380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8Z4]
Coordinates
chrLK032137:+:182993..185176
Molecular Weight (calculated)
25218.7 Da
IEP (calculated)
9.116
GRAVY (calculated)
-0.139
Length
222 amino acids
Sequence
(BLAST)
001: MGQESFIYSF VARGTMILAE YTEFTGNFPS IAAQCLQKLP SSSNSKFTYN CDHHTFNFLV EDGFAYCVVA KDALSKQISI AFLERVKADF KKRYGGGKAS
101: TAIPKSLNKE FGPVMKEHMK YIVDHAEEIE KLIKVKAQVS EVKSIMLENI DKAIDRGENL TVLTDKTENL RSQAQEYKKQ GTQVRRKLWY QNMKIKLVVL
201: GILLLLVLII WLSVCHGFNC TD
Best Arabidopsis Sequence Match ( AT4G15780.1 )
(BLAST)
001: MGQESFIYSF VARGTMILAE YTEFTGNFPS IAAQCLQKLP SSSNSKFTYN CDHHTFNFLV EDGYAYCVVA KDSLSKQISI AFLERVKADF KKRYGGGKAS
101: TAIAKSLNKE FGPVMKEHMN YIVDHAEEIE KLIKVKAQVS EVKSIMLENI DKAIDRGENL TVLTDKTENL RSQAREYKKT KGHR
Arabidopsis Description
ATVAMP724vesicle-associated membrane protein 724 [Source:TAIR;Acc:AT4G15780]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.